Workflow

About: Workflow is a research topic. Over the lifetime, 31996 publications have been published within this topic receiving 498339 citations.

Heuristics for QoS-aware Web Service Composition

Abstract: This paper discusses the Quality of Service (QoS)- aware composition of Web Services. The work is based on the assumption that for each task in a workflow a set of alternative Web Services with similar functionality is available and that these Web Services have different QoS parameters and costs. This leads to the general optimization problem of how to select Web Services for each task so that the overall QoS and cost requirements of the composition are satisfied. Current proposals use exact algorithms or complex heuristics (e.g. genetic algorithms) to solve this problem. An actual implementation of a workflow engine (like our WSQoSX architecture), however, has to be able to solve these optimization problems in real-time and under heavy load. Therefore, we present a heuristic that performs extremely well while providing excellent (almost optimal) solutions. Using simulations, we show that in most cases our heuristic is able to calculate solutions that come as close as 99% to the optimal solution while taking less than 2% of the time of a standard exact algorithm. Further, we also investigate how much and under which circumstances the solution obtained by our heuristic can be further improved by other heuristics.

Managing rapidly-evolving scientific workflows

Abstract: We give an overview of VisTrails, a system that provides an infrastructure for systematically capturing detailed provenance and streamlining the data exploration process. A key feature that sets VisTrails apart from previous visualization and scientific workflow systems is a novel action-based mechanism that uniformly captures provenance for data products and workflows used to generate these products. This mechanism not only ensures reproducibility of results, but it also simplifies data exploration by allowing scientists to easily navigate through the space of workflows and parameter settings for an exploration task.

Pathview Web: user friendly pathway visualization and data integration.

Abstract: Pathway analysis is widely used in omics studies. Pathway-based data integration and visualization is a critical component of the analysis. To address this need, we recently developed a novel R package called Pathview. Pathview maps, integrates and renders a large variety of biological data onto molecular pathway graphs. Here we developed the Pathview Web server, as to make pathway visualization and data integration accessible to all scientists, including those without the special computing skills or resources. Pathview Web features an intuitive graphical web interface and a user centered design. The server not only expands the core functions of Pathview, but also provides many useful features not available in the offline R package. Importantly, the server presents a comprehensive workflow for both regular and integrated pathway analysis of multiple omics data. In addition, the server also provides a RESTful API for programmatic access and conveniently integration in third-party software or workflows. Pathview Web is openly and freely accessible at https://pathview.uncc.edu/.

Constraint-based workflow models: change made easy

Abstract: The degree of flexibility of workflow management systems heavily influences the way business processes are executed. Constraint-based models are considered to be more flexible than traditional models because of their semantics: everything that does not violate constraints is allowed. Although constraint-based models are flexible, changes to process definitions might be needed to comply with evolving business domains and exceptional situations. Flexibility can be increased by run-time support for dynamic changes - transferring instances to a new model - and ad-hoc changes - changing the process definition for one instance. In this paper we propose a general framework for a constraint-based process modeling language and its implementation. Our approach supports both ad-hoc and dynamic change, and the transfer of instances can be done easier than in traditional approaches.

The Triana Workflow Environment: Architecture and Applications

Abstract: In this chapter, the Triana workflow environment is described. Triana focuses on supporting services within multiple environments, such as peer-to-peer (P2P) and the Grid, by integrating with various types of middleware toolkits. This approach differs from that of the last chapter, which gave an overview of Taverna, a system designed to support scientists using Grid technology to conduct in silico experiments in biology. Taverna focuses workflow at the Web services level and addresses concerns of how such services should be presented to its users.