D
David Gibson
Researcher at University of California, Santa Cruz
Publications - 3
Citations - 1417
David Gibson is an academic researcher from University of California, Santa Cruz. The author has contributed to research in topics: Genome browser & Genome. The author has an hindex of 3, co-authored 3 publications receiving 1188 citations.
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Journal ArticleDOI
The UCSC Genome Browser database: 2019 update.
Maximilian Haeussler,Ann S. Zweig,Cath Tyner,Matthew L. Speir,Kate R. Rosenbloom,Brian J. Raney,Christopher Lee,Brian T. Lee,Angie S. Hinrichs,Jairo Navarro Gonzalez,David Gibson,Mark Diekhans,Hiram Clawson,Jonathan Casper,Galt P. Barber,David Haussler,Robert M. Kuhn,W. James Kent +17 more
TL;DR: A new tool is added that lets users interactively arrange existing graphing tracks into new groups and create a 30-way primate alignment on the human genome in the UCSC Genome Browser.
Journal ArticleDOI
The UCSC Genome Browser database: 2018 update.
Jonathan Casper,Ann S. Zweig,Chris Villarreal,Cath Tyner,Matthew L. Speir,Kate R. Rosenbloom,Brian J. Raney,Christopher Lee,Brian T. Lee,Donna Karolchik,Angie S. Hinrichs,Maximilian Haeussler,Luvina Guruvadoo,Jairo Navarro Gonzalez,David Gibson,Ian T. Fiddes,Christopher Eisenhart,Mark Diekhans,Hiram Clawson,Galt P. Barber,Joel Armstrong,David Haussler,Robert M. Kuhn,W. James Kent +23 more
TL;DR: The UCSC Genome Browser provides a web interface for exploring annotated genome assemblies and annotation tracks and two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions.
Journal ArticleDOI
The UCSC Genome Browser database: 2017 update.
Cath Tyner,Galt P. Barber,Jonathan Casper,Hiram Clawson,Mark Diekhans,Christopher Eisenhart,Clayton M. Fischer,David Gibson,Jairo Navarro Gonzalez,Luvina Guruvadoo,Maximilian Haeussler,Steve Heitner,Angie S. Hinrichs,Donna Karolchik,Brian T. Lee,Christopher Lee,Parisa Nejad,Brian J. Raney,Kate R. Rosenbloom,Matthew L. Speir,Chris Villarreal,John Vivian,Ann S. Zweig,David Haussler,Robert M. Kuhn,W. James Kent +25 more
TL;DR: This year's highlights include newly designed home and gateway pages; a new ‘multi-region’ track display configuration for exon-only, gene-only and custom regions visualization; new genome browsers for three species; eight updated genome assemblies; extended support for new data types such as CRAM, RNA-seq expression data and long-range chromatin interaction pairs; and the unveiling of a new supported mirror site in Japan.