抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

We will review some of the major results in random graphs and some of the more challenging open problems. We will cover algorithmic and structural questions. We will touch on newer models, including those related to the WWW.

Random graphs

Statistical physics has proven to be a fruitful framework to describe phenomena outside the realm of traditional physics. Recent years have witnessed an attempt by physicists to study collective phenomena emerging from the interactions of individuals as elementary units in social structures. A wide list of topics are reviewed ranging from opinion and cultural and language dynamics to crowd behavior, hierarchy formation, human dynamics, and social spreading. The connections between these problems and other, more traditional, topics of statistical physics are highlighted. Comparison of model results with empirical data from social systems are also emphasized.

Statistical physics of social dynamics

The structure and dynamics of multilayer networks

The density-matrix renormalization group (DMRG) is a numerical algorithm for the efficient truncation of the Hilbert space of low-dimensional strongly correlated quantum systems based on a rather general decimation prescription. This algorithm has achieved unprecedented precision in the description of one-dimensional quantum systems. It has therefore quickly become the method of choice for numerical studies of such systems. Its applications to the calculation of static, dynamic, and thermodynamic quantities in these systems are reviewed here. The potential of DMRG applications in the fields of two-dimensional quantum systems, quantum chemistry, three-dimensional small grains, nuclear physics, equilibrium and nonequilibrium statistical physics, and time-dependent phenomena is also discussed. This review additionally considers the theoretical foundations of the method, examining its relationship to matrix-product states and the quantum information content of the density matrices generated by the DMRG.

http://www.physics.udel.edu/~bnikolic/QTTG/NOTES/DMRG/SCHOLLWOCK=RMP_dmrg.pdf

The density-matrix renormalization group

Evolutionary games on graphs

Propagation failure of traveling waves in a discrete bistable medium

White's density-matrix renormalization-group (DMRG) method has been applied to the one-dimensional Ising model in a transverse field (ITF), in order to study the accuracy of the numerical algorithm. Due to the exact solubility of the ITF for any finite chain length, the errors introduced by the basis truncation procedure could have been directly analyzed. By computing different properties, like the energies of the low-lying levels or the ground-state one- and two-point correlation functions, we obtained a detailed picture of how these errors behave as functions of the various model and algorithm parameters. Our experience with the ITF contributes to a better understanding of the DMRG method, and may facilitate its optimization in other applications.

Accuracy of the density-matrix renormalization-group method

We consider various two-leg ladder models exhibiting gapped phases. All of these phases have short-ranged valence bond ground states, and they all exhibit string order. However, we show that short-ranged valence bond ground states divide into two topologically distinct classes, and as a consequence, there exist two topologically distinct types of string order. Therefore, not all gapped phases belong to the same universality class. We show that phase transitions occur when we interpolate between models belonging to different topological classes, and we study the nature of these transitions.

Phase transitions between topologically distinct gapped phases in isotropic spin ladders

We study numerically the elementary excitation spectrum of the most general isotropic spin-1 chain with bilinear-biquadratic nearest-neighbor coupling. Using finite-size scaling, a massless phase with a period tripling in the ground state is found to exist in an extended region around the Lai-Sutherland point. The location of the transition from the known valence-bond-like phase to the trimerized phase cannot, however, be given precisely. We also present results on the ground-state two-point correlation function.

Gábor Fáth

Papers

Evolutionary games on graphs

Propagation failure of traveling waves in a discrete bistable medium

Accuracy of the density-matrix renormalization-group method

Phase transitions between topologically distinct gapped phases in isotropic spin ladders

Period tripling in the bilinear-biquadratic antiferromagnetic S=1 chain