G
Geoffrey L. Winsor
Researcher at Simon Fraser University
Publications - 30
Citations - 6674
Geoffrey L. Winsor is an academic researcher from Simon Fraser University. The author has contributed to research in topics: Genome & Population. The author has an hindex of 17, co-authored 27 publications receiving 4640 citations. Previous affiliations of Geoffrey L. Winsor include Memorial University of Newfoundland & University of British Columbia.
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InnateDB: facilitating systems-level analyses of the mammalian innate immune response
David J. Lynn,David J. Lynn,Geoffrey L. Winsor,Calvin Chan,Nicolas Richard,Matthew R. Laird,Aaron Barsky,Jennifer L. Gardy,Fiona M. Roche,Timothy H.W. Chan,Naisha Shah,Naisha Shah,Raymond Lo,Misbah Naseer,Jaimmie Que,Melissa Yau,Michael Acab,Dan Tulpan,Matthew D. Whiteside,Avinash Chikatamarla,Bernadette Mah,Tamara Munzner,Karsten Hokamp,Robert E. W. Hancock,Fiona S. L. Brinkman +24 more
TL;DR: InnateDB as mentioned in this paper is a publicly available, manually curated, integrative biology database of the human and mouse molecules, experimentally verified interactions and pathways involved in innate immunity, along with centralized annotation on the broader human-and mouse interactomes.
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IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
Bhavjinder K. Dhillon,Matthew R. Laird,Julie A. Shay,Geoffrey L. Winsor,Raymond Lo,Fazmin Nizam,Sheldon K. Pereira,Nicholas Waglechner,Andrew G. McArthur,Morgan G. I. Langille,Fiona S. L. Brinkman +10 more
TL;DR: Overall, IslandViewer 3 represents a significant new version of this GI analysis software, with features that may make it more broadly useful for general microbial genome analysis and visualization.
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Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes
Geoffrey L. Winsor,Thea Van Rossum,Raymond Lo,Bhavjinder K. Khaira,Matthew D. Whiteside,Robert E. W. Hancock,Fiona S. L. Brinkman +6 more
TL;DR: The database capabilities to include all Pseudomonas species are expanded, the database contains robust assessment of orthologs, a novel ortholog clustering method, and incorporates five views of the data at the sequence and annotation levels to facilitate genome comparisons.
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The Burkholderia Genome Database
Geoffrey L. Winsor,Bhavjinder K. Khaira,Thea Van Rossum,Raymond Lo,Matthew D. Whiteside,Fiona S. L. Brinkman +5 more
TL;DR: The Burkholderia Genome Database represents a model for a database focused on providing more information geared for a distinct bacterial phylogenetic group and its associated research community, providing a powerful, user-friendly search and comparative analysis interface that contains features not found in other genome databases.
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Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.
Geoffrey L. Winsor,Raymond Lo,Shannan J. Ho Sui,Korine S.E. Ung,Shaoshan Huang,Dean Cheng,Wai Kay Ho Ching,Robert E. W. Hancock,Fiona S. L. Brinkman +8 more
TL;DR: This database system, with its focus on facilitating flexible queries of the data and providing access to both peer-reviewed annotations as well as alternate annotation information, may be a suitable model for other genome projects wishing to use a continually updated, community-based annotation approach.