Ecological Models and Data in R is the first truly practical introduction to modern statistical methods for ecology. In step-by-step detail, the book teaches ecology graduate students and researchers everything they need to know in order to use maximum likelihood, information-theoretic, and Bayesian techniques to analyze their own data using the programming language R. Drawing on extensive experience teaching these techniques to graduate students in ecology, Benjamin Bolker shows how to choose among and construct statistical models for data, estimate their parameters and confidence limits, and interpret the results. The book also covers statistical frameworks, the philosophy of statistical modeling, and critical mathematical functions and probability distributions. It requires no programming background--only basic calculus and statistics.

Ecological Models and Data in R

Tree Rings And Climate

https://publikationen.bibliothek.kit.edu/1000120986/83353716

A first assessment of the impact of the extreme 2018 summer drought on Central European forests

Concerns about climate change and the desire to develop a domestic, renewable energy source are increasing the interest in forest biomass extraction, especially in the form of logging residues, i.e...

Effects of forest biomass harvesting on soil productivity in boreal and temperate forests - a review.

Agroforestry—the practice of growing trees and crops in interacting combinations—is recognized worldwide as an integrated approach to sustainable land-use. It is estimated to be practiced over 1 billion hectares in developing countries, and to a lesser extent in the industrialized countries. Agroforestry systems (AFSs) are believed to have a higher potential to sequester carbon (C) because of their perceived ability for greater capture and utilization of growth resources (light, nutrients, and water) than single-species crop or pasture systems. The estimates of C stored in AFSs range from 0.29 to 15.21 Mg ha − 1  yr − 1 aboveground, and 30 to 300 Mg C ha − 1 up to 1-m depth in the soil. Recent studies under various AFSs in diverse ecological conditions showed that tree-based agricultural systems, compared to treeless systems, stored more C in deeper soil layers near the tree than away from the tree; higher soil organic carbon content was associated with higher species richness and tree density; and C3 plants (trees) contributed to more C in the silt- + clay-sized (

Carbon Sequestration in Agroforestry Systems

Sustainability of forest management practices: Evaluation through a simulation model of nutrient cycling

We conducted two experiments to assess drift and benthic invertebrate responses to stepwise and abrupt changes in non-scouring flow in gravel-bed experimental streams. Intuitively, a stepwise flow increase should allow aquatic invertebrates more time to seek refuges than would an abrupt increase. We hypothesized that abrupt flow increases would result in larger increases in taxon richness and in the number of invertebrates in the drift, and a larger decrease in benthic density than would stepwise flow increases. Two kinds of drift response to flow increases were observed in the stepwise experiment: (1) no response (e.g. Caenissp. [Ephemeroptera] and Sphaeriidae [Pelecypoda]); (2) threshold response of some aquatic (e.g. Crangonyx pseudogracilis[Amphipoda]) and semiaquatic (e.g. Ormosiasp. [Diptera]) taxa. Drift richness and drift density in both experiments declined after reaching a peak. The peak was reached almost immediately in the abrupt treatment and later in the stepwise treatment. Maximum richness of taxa and taxon composition in the drift were similar in both experiments. Despite significant increases in drift, stepwise and abrupt increases in flow did not have a significant effect on benthic density. However, relative to reference streams, the percentage of total benthic invertebrates in the drift increased 10× in the stepwise experiment and 33× in the abrupt experiment. These non-scouring increases in flow were non-trivial. Our results suggest that several high flow events of the same magnitude (i.e. 2.5–3.0 fold increases) may cause considerable losses of benthic populations to the drift. The rate of increases in flow appears to be important: abrupt increases in flow had a stronger effect on invertebrate drift than did stepwise increases.

Drift and benthic invertebrate responses to stepwise and abrupt increases in non-scouring flow

Mixed conifer–hardwood forests can be more productive than pure forests and they are increasingly considered as ecosystems that could provide adaptation strategies in the face of global change. However, the combined effects of tree-to-tree competition, rising atmospheric CO2 concentrations and climate on such mixtures remain poorly characterized and understood.
To fill this research gap, we reconstructed 34-year series (1980–2013) of growth (basal area increment, BAI) and intrinsic water-use efficiency (iWUE) of Scots pine (Pinus sylvestris L.)–European beech (Fagus sylvatica L.) mixed stands at two climatically contrasting sites located in the southwestern Pyrenees. We also gathered data on tree-to-tree competition and climate variables in order to test the hypotheses that (1) radial growth will be greater when exposed to inter- than to intraspecific competition, that is, when species complementarity occurs and (2) enhanced iWUE could be linked to improved stem radial growth.
Growth of both species was reduced when intraspecific competition increased. Species complementarity was linked to improved growth of Scots pine at the continental site, while competition overrode any complementarity advantage at the drought-prone Mediterranean site. Beech growth did not show any significant response to pine admixture likely due to shade tolerance and the highly competitive nature of this species. Increasing interspecific competition drove recent iWUE changes, which increased in Scots pine but decreased in European beech. The iWUE enhancement did not involve any growth improvement in Scots pine. However, the positive BAI-iWUE relationship found for beech suggests an enhanced beech growth in drought-prone sites due to improved water use.
Synthesis. Complementarity may enhance growth in mixed forests. However, water scarcity can constrict light-related complementarity for shade intolerant species (Scots pine) in drought-prone sites. Basal area increment–intrinsic water-use efficiency relationships were negative for Scots pine and positive for European beech. These contrasting behaviours have got implications for coping with the expected increasing drought events in Scots pine–European beech mixtures located near the ecological limit of the two species. Complementarity effects between tree species should be considered to avoid overestimating the degree of future carbon uptake by mixed conifer–broadleaf forests.

https://besjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1365-2745.12813

Tree-to-tree competition in mixed European beech–Scots pine forests has different impacts on growth and water-use efficiency depending on site conditions

Influence of site characteristics and thinning intensity on litterfall production in two Pinus sylvestris L. forests in the western Pyrenees

Changes in mass and chemical composition of Pinus sylvestris senescent needles were studied over a 5 year period in Mediterranean (MF) and Continental forests (CF) in the Pyrenees under varying levels of thinning (P0: reference, no thinning; P20: removal of 20% basal area, P30: removal of 30% basal area). Decomposition rates were higher in MF (k = 0.423 year−1) than in CF (k = 0.245 year−1). However, the maximum decomposition limit was higher in MF (87.9%) compared to CF (78.1%). The relative importance and timing of rainfall, and cellulose and lignin abundance on the decomposition process was similar among both sites. However, air temperature and degree-days only affected CF (the colder site) during the initial stages of decomposition, while litter moisture was significant only in MF (the drier site) in the latter stages of decomposition. Nutrient and carbon dynamics showed temporal patterns similar to those reported in higher latitudes (except for Ca), however, indicators of N mineralization such as C/N and lignin/N at the study sites were lower than values reported in the literature. Decreases in decomposition rates after thinning were higher in MF than in CF, indicating that this ecosystem could, in the short term, be more sensitive to human intervention. Thinning had similar temporary qualitative effects at both sites, slowing decomposition, increasing N and P immobilization and decreasing Ca immobilization. However, quantitative effects of thinning were site dependent in that the magnitude of nutrient immobilization was higher in CF. A conceptual model is presented to explain effects of thinning on litter N dynamics. These temporary changes are not trivial as nutrient immobilization and accumulated organic matter losses over a thinning cycle may affect tree growth particularly during short rotations and intensive fast-growing plantations. Under similar nutrient availability conditions, sites where nutrient release occurs faster may show higher post-thinning tree growth rates.

J. Bosco Imbert

Papers

Sustainability of forest management practices: Evaluation through a simulation model of nutrient cycling

Drift and benthic invertebrate responses to stepwise and abrupt increases in non-scouring flow

Tree-to-tree competition in mixed European beech–Scots pine forests has different impacts on growth and water-use efficiency depending on site conditions

Influence of site characteristics and thinning intensity on litterfall production in two Pinus sylvestris L. forests in the western Pyrenees

Thinning affects Pinus sylvestris needle decomposition rates and chemistry differently depending on site conditions