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Pattern Recognition with Fuzzy Objective Function Algorithms

The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices of the same cluster and comparatively few edges joining vertices of different clusters. Such clusters, or communities, can be considered as fairly independent compartments of a graph, playing a similar role like, e. g., the tissues or the organs in the human body. Detecting communities is of great importance in sociology, biology and computer science, disciplines where systems are often represented as graphs. This problem is very hard and not yet satisfactorily solved, despite the huge effort of a large interdisciplinary community of scientists working on it over the past few years. We will attempt a thorough exposition of the topic, from the definition of the main elements of the problem, to the presentation of most methods developed, with a special focus on techniques designed by statistical physicists, from the discussion of crucial issues like the significance of clustering and how methods should be tested and compared against each other, to the description of applications to real networks.

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Community detection in graphs

Organizing data into sensible groupings is one of the most fundamental modes of understanding and learning. As an example, a common scheme of scientific classification puts organisms into a system of ranked taxa: domain, kingdom, phylum, class, etc. Cluster analysis is the formal study of methods and algorithms for grouping, or clustering, objects according to measured or perceived intrinsic characteristics or similarity. Cluster analysis does not use category labels that tag objects with prior identifiers, i.e., class labels. The absence of category information distinguishes data clustering (unsupervised learning) from classification or discriminant analysis (supervised learning). The aim of clustering is to find structure in data and is therefore exploratory in nature. Clustering has a long and rich history in a variety of scientific fields. One of the most popular and simple clustering algorithms, K-means, was first published in 1955. In spite of the fact that K-means was proposed over 50 years ago and thousands of clustering algorithms have been published since then, K-means is still widely used. This speaks to the difficulty in designing a general purpose clustering algorithm and the ill-posed problem of clustering. We provide a brief overview of clustering, summarize well known clustering methods, discuss the major challenges and key issues in designing clustering algorithms, and point out some of the emerging and useful research directions, including semi-supervised clustering, ensemble clustering, simultaneous feature selection during data clustering, and large scale data clustering.

Data clustering: 50 years beyond K-means

Data analysis plays an indispensable role for understanding various phenomena. Cluster analysis, primitive exploration with little or no prior knowledge, consists of research developed across a wide variety of communities. The diversity, on one hand, equips us with many tools. On the other hand, the profusion of options causes confusion. We survey clustering algorithms for data sets appearing in statistics, computer science, and machine learning, and illustrate their applications in some benchmark data sets, the traveling salesman problem, and bioinformatics, a new field attracting intensive efforts. Several tightly related topics, proximity measure, and cluster validation, are also discussed.

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Survey of clustering algorithms

Two fuzzy versions of the k-means optimal, least squared error partitioning problem are formulated for finite subsets X of a general inner product space. In both cases, the extremizing solutions are shown to be fixed points of a certain operator T on the class of fuzzy, k-partitions of X, and simple iteration of T provides an algorithm which has the descent property relative to the least squared error criterion function. In the first case, the range of T consists largely of ordinary (i.e. non-fuzzy) partitions of X and the associated iteration scheme is essentially the well known ISODATA process of Ball and Hall. However, in the second case, the range of T consists mainly of fuzzy partitions and the associated algorithm is new; when X consists of k compact well separated (CWS) clusters, Xi , this algorithm generates a limiting partition with membership functions which closely approximate the characteristic functions of the clusters Xi . However, when X is not the union of k CWS clusters, the limi...

J. C. Dunn

Papers

A Fuzzy Relative of the ISODATA Process and Its Use in Detecting Compact Well-Separated Clusters

A fuzzy relative of the isodata process and its use in detecting compact well-separated clusters