Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems. This package focuses on bringing machine learning to non-specialists using a general-purpose high-level language. Emphasis is put on ease of use, performance, documentation, and API consistency. It has minimal dependencies and is distributed under the simplified BSD license, encouraging its use in both academic and commercial settings. Source code, binaries, and documentation can be downloaded from http://scikit-learn.sourceforge.net.

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Scikit-learn: Machine Learning in Python

Summary. We propose the elastic net, a new regularization and variable selection method. Real world data and a simulation study show that the elastic net often outperforms the lasso, while enjoying a similar sparsity of representation. In addition, the elastic net encourages a grouping effect, where strongly correlated predictors tend to be in or out of the model together.The elastic net is particularly useful when the number of predictors (p) is much bigger than the number of observations (n). By contrast, the lasso is not a very satisfactory variable selection method in the

/pdf/regularization-and-variable-selection-via-the-elastic-net-4z8q6j5o0i.pdf

Regularization and variable selection via the elastic net

We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, two-class logistic regression, and multinomial regression problems while the penalties include l(1) (the lasso), l(2) (ridge regression) and mixtures of the two (the elastic net). The algorithms use cyclical coordinate descent, computed along a regularization path. The methods can handle large problems and can also deal efficiently with sparse features. In comparative timings we find that the new algorithms are considerably faster than competing methods.

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Regularization Paths for Generalized Linear Models via Coordinate Descent

Despite widespread adoption, machine learning models remain mostly black boxes. Understanding the reasons behind predictions is, however, quite important in assessing trust, which is fundamental if one plans to take action based on a prediction, or when choosing whether to deploy a new model. Such understanding also provides insights into the model, which can be used to transform an untrustworthy model or prediction into a trustworthy one. In this work, we propose LIME, a novel explanation technique that explains the predictions of any classifier in an interpretable and faithful manner, by learning an interpretable model locally varound the prediction. We also propose a method to explain models by presenting representative individual predictions and their explanations in a non-redundant way, framing the task as a submodular optimization problem. We demonstrate the flexibility of these methods by explaining different models for text (e.g. random forests) and image classification (e.g. neural networks). We show the utility of explanations via novel experiments, both simulated and with human subjects, on various scenarios that require trust: deciding if one should trust a prediction, choosing between models, improving an untrustworthy classifier, and identifying why a classifier should not be trusted.

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"Why Should I Trust You?": Explaining the Predictions of Any Classifier

This paper demonstrates theoretically and empirically that a greedy algorithm called orthogonal matching pursuit (OMP) can reliably recover a signal with m nonzero entries in dimension d given O(m ln d) random linear measurements of that signal. This is a massive improvement over previous results, which require O(m2) measurements. The new results for OMP are comparable with recent results for another approach called basis pursuit (BP). In some settings, the OMP algorithm is faster and easier to implement, so it is an attractive alternative to BP for signal recovery problems.

/pdf/signal-recovery-from-random-measurements-via-orthogonal-5adhd8dwmq.pdf

Signal Recovery From Random Measurements Via Orthogonal Matching Pursuit

The present invention relates to a method for identification of a relationship between biological elements, said elements potentially having a measurable activity, the method comprising the following steps: - defining candidate graphs, each candidate graph being a graph associated with one of the threshold values of the plurality of threshold values, - for each threshold value, obtaining an associated distribution by optimization of the distribution into classes of peaks of the associated graph at the considered threshold value, the optimization starting from an initial distribution in which each core is associated with a class for obtaining a final distribution in which each peak of a class shares more links with the other peaks of the same class than with the peaks of another class, - selecting an optimal graph from among the plurality of candidate graphs according to at least one criterion.

Method of identification of a relationship between biological elements

We provide a Central Limit Theorem for the Monge-Kantorovich distance between two empirical distributions with size $n$ and $m$, $W_p(P_n,Q_m)$ for $p>1$ for observations on the real line, using a minimal amount of assumptions We provide an estimate of the asymptotic variance which enables to build a two sample test to assess the similarity between two distributions This test is then used to provide a new criterion to assess the notion of fairness of a classification algorithm

A Central Limit Theorem for $L_p$ transportation cost with applications to Fairness Assessment in Machine Learning

https://hal.archives-ouvertes.fr/hal-00095451/document

Hurst exponent estimation of Fractional L

Optimal transport maps define a one-to-one correspondence between probability distributions, and as such have grown popular for machine learning applications. However, these maps are generally defined on empirical observations and cannot be generalized to new samples while preserving asymptotic properties. We extend a novel method to learn a consistent estimator of a continuous optimal transport map from two empirical distributions. The consequences of this work are two-fold: first, it enables to extend the transport plan to new observations without computing again the discrete optimal transport map; second, it provides statistical guarantees to machine learning applications of optimal transport. We illustrate the strength of this approach by deriving a consistent framework for transport-based counterfactual explanations in fairness.

Jean-Michel Loubes

Papers

Method of identification of a relationship between biological elements

A Central Limit Theorem for $L_p$ transportation cost with applications to Fairness Assessment in Machine Learning

Hurst exponent estimation of Fractional L

A Consistent Extension of Discrete Optimal Transport Maps for Machine Learning Applications

Nonparametric maximum likelihood estimator for a certain class of inverse problems