Deep learning (DL) is a branch of machine learning and artificial intelligence that has been applied to many areas in different domains such as health care and drug design. Cancer prognosis estimates the ultimate fate of a cancer subject and provides survival estimation of the subjects. An accurate and timely diagnostic and prognostic decision will greatly benefit cancer subjects. DL has emerged as a technology of choice due to the availability of high computational resources. The main components in a standard computer-aided design (CAD) system are preprocessing, feature recognition, extraction and selection, categorization, and performance assessment. Reduction of costs associated with sequencing systems offers a myriad of opportunities for building precise models for cancer diagnosis and prognosis prediction. In this survey, we provided a summary of current works where DL has helped to determine the best models for the cancer diagnosis and prognosis prediction tasks. DL is a generic model requiring minimal data manipulations and achieves better results while working with enormous volumes of data. Aims are to scrutinize the influence of DL systems using histopathology images, present a summary of state-of-the-art DL methods, and give directions to future researchers to refine the existing methods.

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Deep Learning in Cancer Diagnosis and Prognosis Prediction: A Minireview on Challenges, Recent Trends, and Future Directions.

A brain Magnetic resonance imaging (MRI) scan of a single individual consists of several slices across the 3D anatomical view. Therefore, manual segmentation of brain tumors from magnetic resonance (MR) images is a challenging and time-consuming task. In addition, an automated brain tumor classification from an MRI scan is non-invasive so that it avoids biopsy and make the diagnosis process safer. Since the beginning of this millennia and late nineties, the effort of the research community to come-up with automatic brain tumor segmentation and classification method has been tremendous. As a result, there are ample literature on the area focusing on segmentation using region growing, traditional machine learning and deep learning methods. Similarly, a number of tasks have been performed in the area of brain tumor classification into their respective histological type, and an impressive performance results have been obtained. Considering state of-the-art methods and their performance, the purpose of this paper is to provide a comprehensive survey of three, recently proposed, major brain tumor segmentation and classification model techniques, namely, region growing, shallow machine learning and deep learning. The established works included in this survey also covers technical aspects such as the strengths and weaknesses of different approaches, pre- and post-processing techniques, feature extraction, datasets, and models’ performance evaluation metrics.

A Survey of Brain Tumor Segmentation and Classification Algorithms.

Brain tumor segmentation of MRI images: A comprehensive review on the application of artificial intelligence tools

Multimodal medical image segmentation using multi-scale context-aware network

Multimodal Medical Image Segmentation Using Multi-scale Context-aware Network

Segmentation of the multimodal brain tumor image used the multi-pathway architecture method based on 3D FCN

Abstract Automated segmentation of cardiac pathology in MRI plays a significant role for diagnosis and treatment of some cardiac disease. In clinical practice, multi-modality MRI is widely used to improve the cardiac pathology segmentation, because it can provide multiple or complementary information. Recently, deep learning methods have presented implausible performance in multi-modality medical image segmentation. However, how to fuse the underlying multi-modality information effectively to segment the pathology with irregular shapes and small region at random locations, is still a challenge task. In this paper, a triple-attention-based multi-modality MRI fusion U-Net was proposed to learn complex relationship between different modalities and pay more attention on shape information, thus to achieve improved pathology segmentation. First, three independent encoders and one fusion encoder were applied to extract specific and multiple modality features. Secondly, we concatenate the modality feature maps and use the channel attention to fuse specific modal information at every stage of the three dedicate independent encoders, then the three single modality feature maps and channel attention feature maps are together concatenated to the decoder path. Spatial attention was adopted in decoder path to capture the correlation of various positions. Once more, we employ shape attention to focus shape-dependent information. Lastly, the training approach is made efficient by introducing deep supervision mechanism with object contextual representations block to ensure precisely boundary prediction. Our proposed network was evaluated on the public MICCAI 2020 Myocardial pathology segmentation dataset which involves patients suffering from myocardial infarction. Experiments on the dataset with three modalities demonstrate the effectiveness of fusion mode of our model, and attention mechanism can integrate various modality information well. We demonstrated that such a deep learning approach could better fuse complementary information to improve the segmentation performance of cardiac pathology. 

/pdf/taunet-a-triple-attention-based-multi-modality-mri-fusion-u-2zocvvbl.pdf

TAUNet: a triple-attention-based multi-modality MRI fusion U-Net for cardiac pathology segmentation

The multimodal MRI brain tumor segmentation based on AD-Net

Gliomas are the most common brain tumors, which have a high mortality. Magnetic resonance imaging (MRI) is useful to assess gliomas, in which segmentation of multimodal brain tissues in 3D medical images is of great significance for brain diagnosis. Due to manual job for segmentation is time-consuming, an automated and accurate segmentation method is required. How to segment multimodal brain accurately is still a challenging task. To address this problem, we employ residual neural blocks and a U-Net architecture to build a novel network. We have evaluated the performances of different primary residual neural blocks in building U-Net. Our proposed method was evaluated on the validation set of BraTS 2020, in which our model makes an effective segmentation for the complete, core and enhancing tumor regions in Dice Similarity Coefficient (DSC) metric (0.89, 0.78, 0.72). And in testing set, our model got the DSC results of 0.87, 0.82, 0.80. Residual convolutional block is especially useful to improve performance in building model. Our proposed method is inherently general and is a powerful tool to studies of medical images of brain tumors.

Jindong Sun

Papers

Segmentation of the multimodal brain tumor image used the multi-pathway architecture method based on 3D FCN

TAUNet: a triple-attention-based multi-modality MRI fusion U-Net for cardiac pathology segmentation

The multimodal MRI brain tumor segmentation based on AD-Net

Segmentation of the Multimodal Brain Tumor Images Used Res-U-Net.

A new piecewise reproducing kernel function algorithm for solving nonlinear Hamiltonian systems