J
Joshua L. Deignan
Researcher at University of California, Los Angeles
Publications - 59
Citations - 3660
Joshua L. Deignan is an academic researcher from University of California, Los Angeles. The author has contributed to research in topics: Exome sequencing & Exome. The author has an hindex of 23, co-authored 55 publications receiving 3013 citations.
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Journal ArticleDOI
Clinical Exome Sequencing for Genetic Identification of Rare Mendelian Disorders
Hane Lee,Joshua L. Deignan,Naghmeh Dorrani,Samuel P. Strom,Sibel Kantarci,Fabiola Quintero-Rivera,Kingshuk Das,Traci Toy,Bret Harry,Michael Yourshaw,Michelle Fox,Brent L. Fogel,Julian A. Martinez-Agosto,Derek Wong,Vivian Y. Chang,Perry B. Shieh,Christina G.S. Palmer,Katrina M. Dipple,Wayne W. Grody,Eric Vilain,Stanley F. Nelson +20 more
TL;DR: Initial clinical indications for CES referrals and molecular diagnostic rates for different indications and for different test types are reported, and trio-CES was associated with higher molecular diagnostic yield than proband-Ces or traditional molecular diagnostic methods.
Journal ArticleDOI
ACMG clinical laboratory standards for next-generation sequencing.
Heidi L. Rehm,Sherri J. Bale,Pinar Bayrak-Toydemir,Jonathan S. Berg,Kerry K. Brown,Joshua L. Deignan,Michael J. Friez,Birgit Funke,Birgit Funke,Madhuri Hegde,Elaine Lyon +10 more
TL;DR: The American College of Medical Genetics and Genomics has developed the following professional standards and guidelines to assist clinical laboratories with the validation ofNext-generation sequencing methods and platforms, the ongoing monitoring of next- generation sequencing testing to ensure quality results, and the interpretation and reporting of variants found using these technologies.
Journal ArticleDOI
Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks.
Xia Yang,Joshua L. Deignan,Hongxiu Qi,Jun Zhu,Su Qian,Judy Zhong,Gevork Torosyan,Sana Majid,Brie Falkard,Robert R. Kleinhanz,Jenny C Karlsson,Lawrence W. Castellani,Sheena Mumick,Kai Wang,Tao Xie,Michael Coon,Chunsheng Zhang,Daria Estrada-Smith,Charles R. Farber,Susanna S. Wang,Atila van Nas,Anatole Ghazalpour,Bin Zhang,Douglas J. MacNeil,John Lamb,Katrina M. Dipple,Marc L. Reitman,Margarete Mehrabian,Pek Yee Lum,Eric E. Schadt,Aldons J. Lusis,Thomas A. Drake +31 more
TL;DR: Liver expression signatures revealed alterations in common metabolic pathways and networks contributing to abdominal obesity and overlapped with a macrophage-enriched metabolic network module that is highly associated with metabolic traits in mice and humans.
Journal ArticleDOI
Exome sequencing in the clinical diagnosis of sporadic or familial cerebellar ataxia.
Brent L. Fogel,Hane Lee,Joshua L. Deignan,Samuel P. Strom,Sibel Kantarci,Xizhe Wang,Fabiola Quintero-Rivera,Eric Vilain,Wayne W. Grody,Susan Perlman,Daniel H. Geschwind,Stanley F. Nelson +11 more
TL;DR: This study demonstrated that clinical exome sequencing in patients with adult-onset and sporadic presentations of ataxia is a high-yield test, providing a definitive diagnosis in more than one-fifth of patients and suggesting a potential diagnosis in almost one-third to guide additional phenotyping and diagnostic evaluation.
Journal ArticleDOI
Assessing the necessity of confirmatory testing for exome-sequencing results in a clinical molecular diagnostic laboratory
Samuel P. Strom,Hane Lee,Kingshuk Das,Eric Vilain,Stanley F. Nelson,Wayne W. Grody,Joshua L. Deignan +6 more
TL;DR: Assessment of the accuracy of next-generation sequencing variant identification in a clinical genomics laboratory established a quality score threshold for confirmatory Sanger-based testing, predicting that going forward, the volume of Sanger confirmation can be reduced, alleviating a significant amount of the labor and cost burden on clinical laboratories wishing to use next- generation sequencing technology.