It is now well understood that (1) it is possible to reconstruct sparse signals exactly from what appear to be highly incomplete sets of linear measurements and (2) that this can be done by constrained l1 minimization. In this paper, we study a novel method for sparse signal recovery that in many situations outperforms l1 minimization in the sense that substantially fewer measurements are needed for exact recovery. The algorithm consists of solving a sequence of weighted l1-minimization problems where the weights used for the next iteration are computed from the value of the current solution. We present a series of experiments demonstrating the remarkable performance and broad applicability of this algorithm in the areas of sparse signal recovery, statistical estimation, error correction and image processing. Interestingly, superior gains are also achieved when our method is applied to recover signals with assumed near-sparsity in overcomplete representations—not by reweighting the l1 norm of the coefficient sequence as is common, but by reweighting the l1 norm of the transformed object. An immediate consequence is the possibility of highly efficient data acquisition protocols by improving on a technique known as Compressive Sensing.

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Enhancing Sparsity by Reweighted ℓ 1 Minimization

In the field of machine learning, semi-supervised learning (SSL) occupies the middle ground, between supervised learning (in which all training examples are labeled) and unsupervised learning (in which no label data are given). Interest in SSL has increased in recent years, particularly because of application domains in which unlabeled data are plentiful, such as images, text, and bioinformatics. This first comprehensive overview of SSL presents state-of-the-art algorithms, a taxonomy of the field, selected applications, benchmark experiments, and perspectives on ongoing and future research. Semi-Supervised Learning first presents the key assumptions and ideas underlying the field: smoothness, cluster or low-density separation, manifold structure, and transduction. The core of the book is the presentation of SSL methods, organized according to algorithmic strategies. After an examination of generative models, the book describes algorithms that implement the low-density separation assumption, graph-based methods, and algorithms that perform two-step learning. The book then discusses SSL applications and offers guidelines for SSL practitioners by analyzing the results of extensive benchmark experiments. Finally, the book looks at interesting directions for SSL research. The book closes with a discussion of the relationship between semi-supervised learning and transduction. Adaptive Computation and Machine Learning series

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Semi-Supervised Learning

In recent years, a variety of nonlinear dimensionality reduction techniques have been proposed that aim to address the limitations of traditional techniques such as PCA and classical scaling. The paper presents a review and systematic comparison of these techniques. The performances of the nonlinear techniques are investigated on artificial and natural tasks. The results of the experiments reveal that nonlinear techniques perform well on selected artificial tasks, but that this strong performance does not necessarily extend to real-world tasks. The paper explains these results by identifying weaknesses of current nonlinear techniques, and suggests how the performance of nonlinear dimensionality reduction techniques may be improved.

/pdf/dimensionality-reduction-a-comparative-review-4vhn8oy7jr.pdf

Dimensionality Reduction: A Comparative Review

Methods of dimensionality reduction provide a way to understand and visualize the structure of complex data sets. Traditional methods like principal component analysis and classical metric multidimensional scaling suffer from being based on linear models. Until recently, very few methods were able to reduce the data dimensionality in a nonlinear way. However, since the late nineties, many new methods have been developed and nonlinear dimensionality reduction, also called manifold learning, has become a hot topic. New advances that account for this rapid growth are, e.g. the use of graphs to represent the manifold topology, and the use of new metrics like the geodesic distance. In addition, new optimization schemes, based on kernel techniques and spectral decomposition, have lead to spectral embedding, which encompasses many of the recently developed methods. This book describes existing and advanced methods to reduce the dimensionality of numerical databases. For each method, the description starts from intuitive ideas, develops the necessary mathematical details, and ends by outlining the algorithmic implementation. Methods are compared with each other with the help of different illustrative examples. The purpose of the book is to summarize clear facts and ideas about well-known methods as well as recent developments in the topic of nonlinear dimensionality reduction. With this goal in mind, methods are all described from a unifying point of view, in order to highlight their respective strengths and shortcomings. The book is primarily intended for statisticians, computer scientists and data analysts. It is also accessible to other practitioners having a basic background in statistics and/or computational learning, like psychologists (in psychometry) and economists.

Nonlinear Dimensionality Reduction

Evolutionary dynamics have been traditionally studied in the context of homogeneous or spatially extended populations1,2,3,4. Here we generalize population structure by arranging individuals on a graph. Each vertex represents an individual. The weighted edges denote reproductive rates which govern how often individuals place offspring into adjacent vertices. The homogeneous population, described by the Moran process3, is the special case of a fully connected graph with evenly weighted edges. Spatial structures are described by graphs where vertices are connected with their nearest neighbours. We also explore evolution on random and scale-free networks5,6,7. We determine the fixation probability of mutants, and characterize those graphs for which fixation behaviour is identical to that of a homogeneous population7. Furthermore, some graphs act as suppressors and others as amplifiers of selection. It is even possible to find graphs that guarantee the fixation of any advantageous mutant. We also study frequency-dependent selection and show that the outcome of evolutionary games can depend entirely on the structure of the underlying graph. Evolutionary graph theory has many fascinating applications ranging from ecology to multi-cellular organization and economics.

Evolutionary dynamics on graphs

We consider a Markov process on a connected graph, with edges labeled with transition rates between the adjacent vertices. The distribution of the Markov process converges to the uniform distribution at a rate determined by the second smallest eigenvalue $\lambda_2$ of the Laplacian of the weighted graph. In this paper we consider the problem of assigning transition rates to the edges so as to maximize $\lambda_2$ subject to a linear constraint on the rates. This is the problem of finding the fastest mixing Markov process (FMMP) on the graph. We show that the FMMP problem is a convex optimization problem, which can in turn be expressed as a semidefinite program, and therefore effectively solved numerically. We formulate a dual of the FMMP problem and show that it has a natural geometric interpretation as a maximum variance unfolding (MVU) problem, , the problem of choosing a set of points to be as far apart as possible, measured by their variance, while respecting local distance constraints. This MVU problem is closely related to a problem recently proposed by Weinberger and Saul as a method for “unfolding” high-dimensional data that lies on a low-dimensional manifold. The duality between the FMMP and MVU problems sheds light on both problems, and allows us to characterize and, in some cases, find optimal solutions.

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The Fastest Mixing Markov Process on a Graph and a Connection to a Maximum Variance Unfolding Problem

(2006). Fastest Mixing Markov Chain on a Path. The American Mathematical Monthly: Vol. 113, No. 1, pp. 70-74.

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Fastest mixing markov chain on a path

We present a unified duality view of several recently emerged spectral methods for nonlinear dimensionality reduction, including Isomap, locally linear embedding, Laplacian eigenmaps, and maximum variance unfolding. We discuss the duality theory for the maximum variance unfolding problem, and show that other methods are directly related to either its primal formulation or its dual formulation, or can be interpreted from the optimality conditions. This duality framework reveals close connections between these seemingly quite different algorithms. In particular, it resolves the myth about these methods in using either the top eigenvectors of a dense matrix, or the bottom eigenvectors of a sparse matrix --- these two eigenspaces are exactly aligned at primal-dual optimality.

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Jun Sun

Papers

The Fastest Mixing Markov Process on a Graph and a Connection to a Maximum Variance Unfolding Problem

Fastest mixing markov chain on a path

A duality view of spectral methods for dimensionality reduction

Invalidity of “Smaller is stronger” size effect due to stress-induced nanoscale α″ and ω phases in metastable Ti2448