We introduce a new language representation model called BERT, which stands for Bidirectional Encoder Representations from Transformers. Unlike recent language representation models, BERT is designed to pre-train deep bidirectional representations from unlabeled text by jointly conditioning on both left and right context in all layers. As a result, the pre-trained BERT model can be fine-tuned with just one additional output layer to create state-of-the-art models for a wide range of tasks, such as question answering and language inference, without substantial task-specific architecture modifications. 
BERT is conceptually simple and empirically powerful. It obtains new state-of-the-art results on eleven natural language processing tasks, including pushing the GLUE score to 80.5% (7.7% point absolute improvement), MultiNLI accuracy to 86.7% (4.6% absolute improvement), SQuAD v1.1 question answering Test F1 to 93.2 (1.5 point absolute improvement) and SQuAD v2.0 Test F1 to 83.1 (5.1 point absolute improvement).

BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding

We introduce a new language representation model called BERT, which stands for Bidirectional Encoder Representations from Transformers. Unlike recent language representation models (Peters et al., 2018a; Radford et al., 2018), BERT is designed to pre-train deep bidirectional representations from unlabeled text by jointly conditioning on both left and right context in all layers. As a result, the pre-trained BERT model can be fine-tuned with just one additional output layer to create state-of-the-art models for a wide range of tasks, such as question answering and language inference, without substantial task-specific architecture modifications. BERT is conceptually simple and empirically powerful. It obtains new state-of-the-art results on eleven natural language processing tasks, including pushing the GLUE score to 80.5 (7.7 point absolute improvement), MultiNLI accuracy to 86.7% (4.6% absolute improvement), SQuAD v1.1 question answering Test F1 to 93.2 (1.5 point absolute improvement) and SQuAD v2.0 Test F1 to 83.1 (5.1 point absolute improvement).

Language model pretraining has led to significant performance gains but careful comparison between different approaches is challenging. Training is computationally expensive, often done on private datasets of different sizes, and, as we will show, hyperparameter choices have significant impact on the final results. We present a replication study of BERT pretraining (Devlin et al., 2019) that carefully measures the impact of many key hyperparameters and training data size. We find that BERT was significantly undertrained, and can match or exceed the performance of every model published after it. Our best model achieves state-of-the-art results on GLUE, RACE and SQuAD. These results highlight the importance of previously overlooked design choices, and raise questions about the source of recently reported improvements. We release our models and code.

/pdf/roberta-a-robustly-optimized-bert-pretraining-approach-2rj0bdyhim.pdf

RoBERTa: A Robustly Optimized BERT Pretraining Approach

While the Transformer architecture has become the de-facto standard for natural language processing tasks, its applications to computer vision remain limited. In vision, attention is either applied in conjunction with convolutional networks, or used to replace certain components of convolutional networks while keeping their overall structure in place. We show that this reliance on CNNs is not necessary and a pure transformer applied directly to sequences of image patches can perform very well on image classification tasks. When pre-trained on large amounts of data and transferred to multiple mid-sized or small image recognition benchmarks (ImageNet, CIFAR-100, VTAB, etc.), Vision Transformer (ViT) attains excellent results compared to state-of-the-art convolutional networks while requiring substantially fewer computational resources to train.

An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale

Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort1–4, the structures of around 100,000 unique proteins have been determined5, but this represents a small fraction of the billions of known protein sequences6,7. Structural coverage is bottlenecked by the months to years of painstaking effort required to determine a single protein structure. Accurate computational approaches are needed to address this gap and to enable large-scale structural bioinformatics. Predicting the three-dimensional structure that a protein will adopt based solely on its amino acid sequence—the structure prediction component of the ‘protein folding problem’8—has been an important open research problem for more than 50 years9. Despite recent progress10–14, existing methods fall far short of atomic accuracy, especially when no homologous structure is available. Here we provide the first computational method that can regularly predict protein structures with atomic accuracy even in cases in which no similar structure is known. We validated an entirely redesigned version of our neural network-based model, AlphaFold, in the challenging 14th Critical Assessment of protein Structure Prediction (CASP14)15, demonstrating accuracy competitive with experimental structures in a majority of cases and greatly outperforming other methods. Underpinning the latest version of AlphaFold is a novel machine learning approach that incorporates physical and biological knowledge about protein structure, leveraging multi-sequence alignments, into the design of the deep learning algorithm. AlphaFold predicts protein structures with an accuracy competitive with experimental structures in the majority of cases using a novel deep learning architecture.

/pdf/highly-accurate-protein-structure-prediction-with-alphafold-2xjbzfwu3n.pdf

Highly accurate protein structure prediction with AlphaFold

The reading comprehension task, that asks questions about a given evidence document, is a central problem in natural language understanding. Recent formulations of this task have typically focused on answer selection from a set of candidates pre-defined manually or through the use of an external NLP pipeline. However, Rajpurkar et al. (2016) recently released the SQuAD dataset in which the answers can be arbitrary strings from the supplied text. In this paper, we focus on this answer extraction task, presenting a novel model architecture that efficiently builds fixed length representations of all spans in the evidence document with a recurrent network. We show that scoring explicit span representations significantly improves performance over other approaches that factor the prediction into separate predictions about words or start and end markers. Our approach improves upon the best published results of Wang & Jiang (2016) by 5% and decreases the error of Rajpurkar et al.'s baseline by > 50%.

Learning Recurrent Span Representations for Extractive Question Answering

This technical note describes a new baseline for the Natural Questions. Our model is based on BERT and reduces the gap between the model F1 scores reported in the original dataset paper and the human upper bound by 30% and 50% relative for the long and short answer tasks respectively. This baseline has been submitted to the official NQ leaderboard at this http URL. Code, preprocessed data and pretrained model are available at this https URL.

A BERT Baseline for the Natural Questions

We demonstrate that a state-of-the-art parser can be built using only a lexical tagging model and a deterministic grammar, with no explicit model of bi-lexical dependencies. Instead, all dependencies are implicitly encoded in an LSTM supertagger that assigns CCG lexical categories. The parser significantly outperforms all previously published CCG results, supports efficient and optimal A decoding, and benefits substantially from semisupervised tri-training. We give a detailed analysis, demonstrating that the parser can recover long-range dependencies with high accuracy and that the semi-supervised learning enables significant accuracy gains. By running the LSTM on a GPU, we are able to parse over 2600 sentences per second while improving state-of-the-art accuracy by 1.1 F1 in domain and up to 4.5 F1 out of domain.

LSTM CCG Parsing.

We introduce the syntactic scaffold, an approach to incorporating syntactic information into semantic tasks. Syntactic scaffolds avoid expensive syntactic processing at runtime, only making use of a treebank during training, through a multitask objective. We improve over strong baselines on PropBank semantics, frame semantics, and coreference resolution, achieving competitive performance on all three tasks.

/pdf/syntactic-scaffolds-for-semantic-structures-1io4pvjilc.pdf

Syntactic Scaffolds for Semantic Structures.

We present an approach for learning context-dependent semantic parsers to identify and interpret time expressions. We use a Combinatory Categorial Grammar to construct compositional meaning representations, while considering contextual cues, such as the document creation time and the tense of the governing verb, to compute the final time values. Experiments on benchmark datasets show that our approach outperforms previous stateof-the-art systems, with error reductions of 13% to 21% in end-to-end performance.

/pdf/context-dependent-semantic-parsing-for-time-expressions-xwgbhcil84.pdf

Kenton Lee

Papers

Learning Recurrent Span Representations for Extractive Question Answering

A BERT Baseline for the Natural Questions

LSTM CCG Parsing.

Syntactic Scaffolds for Semantic Structures.

Context-dependent Semantic Parsing for Time Expressions