K
Klaus Schliep
Researcher at University of Massachusetts Boston
Publications - 38
Citations - 8165
Klaus Schliep is an academic researcher from University of Massachusetts Boston. The author has contributed to research in topics: Phylogenetic tree & Phylogenetics. The author has an hindex of 17, co-authored 35 publications receiving 5052 citations. Previous affiliations of Klaus Schliep include Centre national de la recherche scientifique & Pierre-and-Marie-Curie University.
Papers
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Journal ArticleDOI
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R.
Emmanuel Paradis,Klaus Schliep +1 more
TL;DR: Efforts have been put to improve efficiency, flexibility, support for 'big data' (R's long vectors), ease of use and quality check before a new release of ape.
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phangorn: Phylogenetic analysis in R
TL;DR: Phangorn is a package for phylogenetic reconstruction and analysis in the R language that offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation.
Weighted k-Nearest-Neighbor Techniques and Ordinal Classification
TL;DR: This paper presents an extended version of k-nearest neighbor classification, where the distances of the nearest neighbors can be taken into account, and shows possibilities to use nearest neighbor for classification in the case of an ordinal class structure.
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Intertwining phylogenetic trees and networks
TL;DR: A framework, implemented in the phangorn library in R, to transfer information between trees and networks, which includes identifying and labelling equivalent tree branches and network edges and transferring tree branch support to network edges.
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Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations
Yan Boucher,Otto X. Cordero,Alison F. Takemura,Dana E. Hunt,Klaus Schliep,Eric Bapteste,Philippe Lopez,Cheryl L. Tarr,Martin F. Polz +8 more
TL;DR: It is shown that environmental Vibrio cholerae possesses two, largely distinct gene pools: one is vertically inherited and globally well mixed, and the other is local and rapidly transferred across species boundaries to generate an endemic population structure.