A comprehensive review of spatiotemporal pattern formation in systems driven away from equilibrium is presented, with emphasis on comparisons between theory and quantitative experiments. Examples include patterns in hydrodynamic systems such as thermal convection in pure fluids and binary mixtures, Taylor-Couette flow, parametric-wave instabilities, as well as patterns in solidification fronts, nonlinear optics, oscillatory chemical reactions and excitable biological media. The theoretical starting point is usually a set of deterministic equations of motion, typically in the form of nonlinear partial differential equations. These are sometimes supplemented by stochastic terms representing thermal or instrumental noise, but for macroscopic systems and carefully designed experiments the stochastic forces are often negligible. An aim of theory is to describe solutions of the deterministic equations that are likely to be reached starting from typical initial conditions and to persist at long times. A unified description is developed, based on the linear instabilities of a homogeneous state, which leads naturally to a classification of patterns in terms of the characteristic wave vector q0 and frequency ω0 of the instability. Type Is systems (ω0=0, q0≠0) are stationary in time and periodic in space; type IIIo systems (ω0≠0, q0=0) are periodic in time and uniform in space; and type Io systems (ω0≠0, q0≠0) are periodic in both space and time. Near a continuous (or supercritical) instability, the dynamics may be accurately described via "amplitude equations," whose form is universal for each type of instability. The specifics of each system enter only through the nonuniversal coefficients. Far from the instability threshold a different universal description known as the "phase equation" may be derived, but it is restricted to slow distortions of an ideal pattern. For many systems appropriate starting equations are either not known or too complicated to analyze conveniently. It is thus useful to introduce phenomenological order-parameter models, which lead to the correct amplitude equations near threshold, and which may be solved analytically or numerically in the nonlinear regime away from the instability. The above theoretical methods are useful in analyzing "real pattern effects" such as the influence of external boundaries, or the formation and dynamics of defects in ideal structures. An important element in nonequilibrium systems is the appearance of deterministic chaos. A greal deal is known about systems with a small number of degrees of freedom displaying "temporal chaos," where the structure of the phase space can be analyzed in detail. For spatially extended systems with many degrees of freedom, on the other hand, one is dealing with spatiotemporal chaos and appropriate methods of analysis need to be developed. In addition to the general features of nonequilibrium pattern formation discussed above, detailed reviews of theoretical and experimental work on many specific systems are presented. These include Rayleigh-Benard convection in a pure fluid, convection in binary-fluid mixtures, electrohydrodynamic convection in nematic liquid crystals, Taylor-Couette flow between rotating cylinders, parametric surface waves, patterns in certain open flow systems, oscillatory chemical reactions, static and dynamic patterns in biological media, crystallization fronts, and patterns in nonlinear optics. A concluding section summarizes what has and has not been accomplished, and attempts to assess the prospects for the future.

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Pattern formation outside of equilibrium

1980 Preface * 1999 Preface * 1999 Acknowledgements * Introduction * 1 Circular Logic * 2 Phase Singularities (Screwy Results of Circular Logic) * 3 The Rules of the Ring * 4 Ring Populations * 5 Getting Off the Ring * 6 Attracting Cycles and Isochrons * 7 Measuring the Trajectories of a Circadian Clock * 8 Populations of Attractor Cycle Oscillators * 9 Excitable Kinetics and Excitable Media * 10 The Varieties of Phaseless Experience: In Which the Geometrical Orderliness of Rhythmic Organization Breaks Down in Diverse Ways * 11 The Firefly Machine 12 Energy Metabolism in Cells * 13 The Malonic Acid Reagent ('Sodium Geometrate') * 14 Electrical Rhythmicity and Excitability in Cell Membranes * 15 The Aggregation of Slime Mold Amoebae * 16 Numerical Organizing Centers * 17 Electrical Singular Filaments in the Heart Wall * 18 Pattern Formation in the Fungi * 19 Circadian Rhythms in General * 20 The Circadian Clocks of Insect Eclosion * 21 The Flower of Kalanchoe * 22 The Cell Mitotic Cycle * 23 The Female Cycle * References * Index of Names * Index of Subjects

https://www.cambridge.org/core/services/aop-cambridge-core/content/view/596B270197FE27DE5FABB598B6210622/S0025557200150892a.pdf/div-class-title-span-class-italic-the-geometry-of-biological-time-span-by-a-t-winfree-pp-544-dm68-corrected-second-printing-1990-isbn-3-540-52528-9-springer-div.pdf

The geometry of biological time , by A. T. Winfree. Pp 544. DM68. Corrected Second Printing 1990. ISBN 3-540-52528-9 (Springer)

The synchronization of chaotic systems

Brownian motors: noisy transport far from equilibrium

Vesicles consisting of a bilayer membrane of amphiphilic lipid molecules are remarkably flexible surfaces that show an amazing variety of shapes of different symmetry and topology. Owing to the fluidity of the membrane, shape transitions such as budding can be induced by temperature changes or the action of optical tweezers. Thermally excited shape fluctuations are both strong and slow enough to be visible by video microscopy. Depending on the physical conditions, vesicles adhere to and unbind from each other or a substrate. This article describes the systematic physical theory developed to understand the static and dynamic aspects of membrane and vesicle configurations. The preferred shapes arise from a competition between curvature energy, which derives from the bending elasticity of the membrane, geometrical constraints such as fixed surface area and fixed enclosed volume, and a signature of the bilayer aspect. These shapes of lowest energy are arranged into phase diagrams, which separate regi...

Configurations of fluid membranes and vesicles

The cubic complex Ginzburg-Landau equation is one of the most-studied nonlinear equations in the physics community. It describes a vast variety of phenomena from nonlinear waves to second-order phase transitions, from superconductivity, superfluidity, and Bose-Einstein condensation to liquid crystals and strings in field theory. The authors give an overview of various phenomena described by the complex Ginzburg-Landau equation in one, two, and three dimensions from the point of view of condensed-matter physicists. Their aim is to study the relevant solutions in order to gain insight into nonequilibrium phenomena in spatially extended systems.

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The world of the complex Ginzburg-Landau equation

A simple generalized time-dependent Ginzburg-Landau equation valid for dirty superconductors in the vicinity of ${T}_{c}$ is derived. For thin homogeneous filaments it exhibits oscillatory phase-slip solutions below and above the critical depairing current. The results are compared with $I\ensuremath{-}V$ curves observed in whiskers and microbridges.

Theory of Dissipative Current-Carrying States in Superconducting Filaments

The theoretical description of the threshold and near-threshold behavior of electrohydrodynamic convection in nematic liquid crystals in the (low-frequency) conduction regime is reconsidered. We present essentially the full three-dimensional linear stability analysis of the basic state and a major part of the weakly-dependence are treated rigorously but the flexoelectric effect is neglected. Related transitions like the periodic splay-twist instability, which is relevant in polymer materials with positive dielectric anisotropy, are also considered. We give criteria for finding the oblique-roll state and for the competition between different instabilities. Comparison with experiments is made wherever possible. Good qualitative and sometimes quantitative agreement is found Analyse lineaire tridimensionnelle complete de l'etat de base et theorie faiblement non lineaire de l'etat convectif pour decrire le comportement au seuil, et pres du seuil, de la convection electrohydrodynamique de cristaux liquides nematiques dans le regime de conduction (basse frequence). Traitement rigoureux des conditions aux limites aux plaques superieure et inferieure et de la variation temporelle. Extension de l'analyse a diverses transitions, comme l'instabilite de «splay-twist» periodique observee dans des polymeres a anisotropie dielectrique positive. Criteres pour l'observation de l'etat des rouleaux obliques et la competition entre differentes instabilites. Comparaison aux donnees experimentales

On electrically driven pattern-forming instabilities in planar nematics

Pattern propagation in nonlinear dissipative systems

General linear viscoelastic response relations are used to obtain the long‐wavelength fluctuations of a thin membrane separating two viscous fluids. The intensity and spectrum of coherent light scattered inelastically from thermal fluctuations are calculated. It is found that the intensity is large enough to allow measurements on black membranes. Our theory includes clean surfaces, interfaces, and insoluble monolayers as special cases.

Lorenz Kramer

Papers

The world of the complex Ginzburg-Landau equation

Theory of Dissipative Current-Carrying States in Superconducting Filaments

On electrically driven pattern-forming instabilities in planar nematics

Pattern propagation in nonlinear dissipative systems

Theory of Light Scattering from Fluctuations of Membranes and Monolayers