An essential textbook for any student or researcher in biology needing to design experiments, sample programs or analyse the resulting data The text begins with a revision of estimation and hypothesis testing methods, covering both classical and Bayesian philosophies, before advancing to the analysis of linear and generalized linear models Topics covered include linear and logistic regression, simple and complex ANOVA models (for factorial, nested, block, split-plot and repeated measures and covariance designs), and log-linear models Multivariate techniques, including classification and ordination, are then introduced Special emphasis is placed on checking assumptions, exploratory data analysis and presentation of results The main analyses are illustrated with many examples from published papers and there is an extensive reference list to both the statistical and biological literature The book is supported by a website that provides all data sets, questions for each chapter and links to software

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Experimental Design and Data Analysis for Biologists

1. Introduction and Overview. 2. Detecting Influential Observations and Outliers. 3. Detecting and Assessing Collinearity. 4. Applications and Remedies. 5. Research Issues and Directions for Extensions. Bibliography. Author Index. Subject Index.

Regression Diagnostics: Identifying Influential Data and Sources of Collinearity

This book provides the most comprehensive treatment of the theoretical concepts and modelling techniques of quantitative risk management. Whether you are a financial risk analyst, actuary, regulator or student of quantitative finance, Quantitative Risk Management gives you the practical tools you need to solve real-world problems. Describing the latest advances in the field, Quantitative Risk Management covers the methods for market, credit and operational risk modelling. It places standard industry approaches on a more formal footing and explores key concepts such as loss distributions, risk measures and risk aggregation and allocation principles. The book's methodology draws on diverse quantitative disciplines, from mathematical finance and statistics to econometrics and actuarial mathematics. A primary theme throughout is the need to satisfactorily address extreme outcomes and the dependence of key risk drivers. Proven in the classroom, the book also covers advanced topics like credit derivatives. Fully revised and expanded to reflect developments in the field since the financial crisis Features shorter chapters to facilitate teaching and learning Provides enhanced coverage of Solvency II and insurance risk management and extended treatment of credit risk, including counterparty credit risk and CDO pricing Includes a new chapter on market risk and new material on risk measures and risk aggregation

/pdf/quantitative-risk-management-concepts-techniques-and-tools-afazrwn4wm.pdf

Quantitative Risk Management: Concepts, Techniques, and Tools

Modern risk management calls for an understanding of stochastic dependence going beyond simple linear correlation. This paper deals with the static (non-time-dependent) case and emphasizes the copula representation of dependence for a random vector. Linear correlation is a natural dependence measure for multivariate normally and, more generally, elliptically distributed risks but other dependence concepts like comonotonicity and rank correlation should also be understood by the risk management practitioner. Using counterexamples the falsity of some commonly held views on correlation is demonstrated; in general, these fallacies arise from the naive assumption that dependence properties of the elliptical world also hold in the non-elliptical world. In particular, the problem of finding multivariate models which are consistent with prespecified marginal distributions and correlations is addressed. Pitfalls are highlighted and simulation algorithms avoiding these problems are constructed.

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Risk Management: Correlation and Dependence in Risk Management: Properties and Pitfalls

The statistical literature on tests to compare treatments after the analysis of variance is reviewed, and the use of these tests in ecology is examined. Monte Carlo simulations on normal and lognormal data indicate that many of the tests commonly used are inappropriate or inefficient. Particular tests are recommended for unplanned multiple comparisons on the basis of controlling experimentwise type I error rate and providing maximum power. These include tests for parametric and nonparametric cases, equal and unequal sample sizes, homogeneous and heterogeneous variances, non-independent means (repeated measures or adjusted means), and comparing treatments to a control. Formulae and a worked example are provided. The problem of violations of assumptions, especially variance heterogeneity, was investigated using simulations, and particular strategies are recommended. The advantages and use of planned comparisons in ecology are discussed, and the philosophy of hypothesis testing with unplanned multiple comparisons is consid- ered in relation to confidence intervals and statistical estimation.

https://www.fc.up.pt/pessoas/amsantos/support/dayquin1989.pdf

Comparisons of Treatments After an Analysis of Variance in Ecology

SUMMARY This paper investigates the properties of a semiparametric method for estimating the dependence parameters in a family of multivariate distributions. The proposed estimator, obtained as a solution of a pseudo-likelihood equation, is shown to be consistent, asymptotically normal and fully efficient at independence. A natural estimator of its asymptotic variance is proved to be consistent. Comparisons are made with alternative semiparametric estimators in the special case of Clayton's model for association in bivariate data.

https://www.jstor.org/stable/pdfplus/2337532.pdf

A semiparametric estimation procedure of dependence parameters in multivariate families of distributions

A bivariate distribution function H(x, y) with marginals F(x) and G(y) is said to be generated by an Archimedean copula if it can be expressed in the form H(x, y) = ϕ–1[ϕ{F(x)} + ϕ{G(y)}] for some convex, decreasing function ϕ defined on [0, 1] in such a way that ϕ(1) = 0. Many well-known systems of bivariate distributions belong to this class, including those of Gumbel, Ali-Mikhail-Haq-Thelot, Clayton, Frank, and Hougaard. Frailty models also fall under that general prescription. This article examines the problem of selecting an Archimedean copula providing a suitable representation of the dependence structure between two variates X and Y in the light of a random sample (X 1, Y 1), …, (X n , Y n ). The key to the estimation procedure is a one-dimensional empirical distribution function that can be constructed whether the uniform representation of X and Y is Archimedean or not, and independently of their marginals. This semiparametric estimator, based on a decomposition of Kendall's tau statistic...

Statistical Inference Procedures for Bivariate Archimedean Copulas

This article introduces Rcapture, an R package for capture-recapture experiments. The data for analysis consists of the frequencies of the observable capture histories over the t capture occasions of the experiment. A capture history is a vector of zeros and ones where one stands for a capture and zero for a miss. Rcapture can fit three types of models. With a closed population model, the goal of the analysis is to estimate the size N of the population which is assumed to be constant throughout the experiment. The estimator depends on the way in which the capture probabilities of the animals vary. Rcapture features several models for these capture probabilities that lead to different estimators for N. In an open population model, immigration and death occur between sampling periods. The estimation of survival rates is of primary interest. Rcapture can fit the basic Cormack-Jolly-Seber and Jolly-Seber model to such data. The third type of models fitted by Rcapture are robust design models. It features two levels of sampling; closed population models apply within primary periods and an open population model applies between periods. Most models in Rcapture have a loglinear form; they are fitted by carrying out a Poisson regression with the R function glm. Estimates of the demographic parameters of interest are derived from the loglinear parameter estimates; their variances are obtained by linearization. The novel feature of this package is the provision of several new options for modeling capture probabilities heterogeneity between animals in both closed population models and the primary periods of a robust design. It also implements many of the techniques developed by R. M. Cormack for open population models.

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Rcapture: Loglinear Models for Capture-Recapture in R

https://www.mat.ulaval.ca/fileadmin/mat/documents/lrivest/Publications/53-GenestRivest2001.pdf

On the multivariate probability integral transformation

https://www.mat.ulaval.ca/fileadmin/mat/documents/lrivest/Publications/18-GenestRivest1989.pdf

Louis-Paul Rivest

Papers

A semiparametric estimation procedure of dependence parameters in multivariate families of distributions

Statistical Inference Procedures for Bivariate Archimedean Copulas

Rcapture: Loglinear Models for Capture-Recapture in R

On the multivariate probability integral transformation

A characterization of gumbel's family of extreme value distributions