The digital transformation of agriculture has evolved various aspects of management into artificial intelligent systems for the sake of making value from the ever-increasing data originated from numerous sources. A subset of artificial intelligence, namely machine learning, has a considerable potential to handle numerous challenges in the establishment of knowledge-based farming systems. The present study aims at shedding light on machine learning in agriculture by thoroughly reviewing the recent scholarly literature based on keywords’ combinations of “machine learning” along with “crop management”, “water management”, “soil management”, and “livestock management”, and in accordance with PRISMA guidelines. Only journal papers were considered eligible that were published within 2018–2020. The results indicated that this topic pertains to different disciplines that favour convergence research at the international level. Furthermore, crop management was observed to be at the centre of attention. A plethora of machine learning algorithms were used, with those belonging to Artificial Neural Networks being more efficient. In addition, maize and wheat as well as cattle and sheep were the most investigated crops and animals, respectively. Finally, a variety of sensors, attached on satellites and unmanned ground and aerial vehicles, have been utilized as a means of getting reliable input data for the data analyses. It is anticipated that this study will constitute a beneficial guide to all stakeholders towards enhancing awareness of the potential advantages of using machine learning in agriculture and contributing to a more systematic research on this topic.

Machine Learning in Agriculture: A Comprehensive Updated Review.

Mapping deforestation is an essential step in the process of managing tropical rainforests. It lets us understand and monitor both legal and illegal deforestation and its implications, which include the effect deforestation may have on climate change through greenhouse gas emissions. Given that there is ample room for improvements when it comes to mapping deforestation using satellite imagery, in this study, we aimed to test and evaluate the use of algorithms belonging to the growing field of deep learning (DL), particularly convolutional neural networks (CNNs), to this end. Although studies have been using DL algorithms for a variety of remote sensing tasks for the past few years, they are still relatively unexplored for deforestation mapping. We attempted to map the deforestation between images approximately one year apart, specifically between 2017 and 2018 and between 2018 and 2019. Three CNN architectures that are available in the literature—SharpMask, U-Net, and ResUnet—were used to classify the change between years and were then compared to two classic machine learning (ML) algorithms—random forest (RF) and multilayer perceptron (MLP)—as points of reference. After validation, we found that the DL models were better in most performance metrics including the Kappa index, F1 score, and mean intersection over union (mIoU) measure, while the ResUnet model achieved the best overall results with a value of 0.94 in all three measures in both time sequences. Visually, the DL models also provided classifications with better defined deforestation patches and did not need any sort of post-processing to remove noise, unlike the ML models, which needed some noise removal to improve results.

Change Detection of Deforestation in the Brazilian Amazon Using Landsat Data and Convolutional Neural Networks

SAR Ship Detection Dataset (SSDD) is the first open dataset that is widely used to research state-of-the-art technology of ship detection from Synthetic Aperture Radar (SAR) imagery based on deep learning (DL). According to our investigation, up to 46.59% of the total 161 public reports confidently select SSDD to study DL-based SAR ship detection. Undoubtedly, this situation reveals the popularity and great influence of SSDD in the SAR remote sensing community. Nevertheless, the coarse annotations and ambiguous standards of use of its initial version both hinder fair methodological comparisons and effective academic exchanges. Additionally, its single-function horizontal-vertical rectangle bounding box (BBox) labels can no longer satisfy the current research needs of the rotatable bounding box (RBox) task and the pixel-level polygon segmentation task. Therefore, to address the above two dilemmas, in this review, advocated by the publisher of SSDD, we will make an official release of SSDD based on its initial version. SSDD’s official release version will cover three types: (1) a bounding box SSDD (BBox-SSDD), (2) a rotatable bounding box SSDD (RBox-SSDD), and (3) a polygon segmentation SSDD (PSeg-SSDD). We relabel ships in SSDD more carefully and finely, and then explicitly formulate some strict using standards, e.g., (1) the training-test division determination, (2) the inshore-offshore protocol, (3) the ship-size reasonable definition, (4) the determination of the densely distributed small ship samples, and (5) the determination of the densely parallel berthing at ports ship samples. These using standards are all formulated objectively based on the using differences of existing 75 (161 × 46.59%) public reports. They will be beneficial for fair method comparison and effective academic exchanges in the future. Most notably, we conduct a comprehensive data analysis on BBox-SSDD, RBox-SSDD, and PSeg-SSDD. Our analysis results can provide some valuable suggestions for possible future scholars to further elaborately design DL-based SAR ship detectors with higher accuracy and stronger robustness when using SSDD.

SAR Ship Detection Dataset (SSDD): Official Release and Comprehensive Data Analysis

Due to the unique advantages of microwave detection, such as its low restriction from the atmosphere and its capability to obtain structural information about ground targets, synthetic aperture radar (SAR) is increasingly used in agricultural observations. However, while SAR data has shown great potential for large-scale crop mapping, there have been few studies on the use of SAR images for large-scale multispecies crop classification at present. In this paper, a large-scale crop mapping method using multi-temporal dual-polarization SAR data was proposed. To reduce multi-temporal SAR data redundancy, a multi-temporal images optimization method based on analysis of variance (ANOVA) and Jeffries–Matusita (J–M) distance was applied to the time series of images after preprocessing to select the optimal images. Facing the challenges from smallholder farming modes, which caused the complex crop planting patterns in the study area, U-Net, an improved fully convolutional network (FCN), was used to predict the different crop types. In addition, the batch normalization (BN) algorithm was introduced to the U-Net model to solve the problem of a large number of crops and unbalanced sample numbers, which had greatly improved the efficiency of network training. Finally, we conducted experiments using multi-temporal Sentinel-1 data from Fuyu City, Jilin Province, China in 2017, and we obtained crop mapping results with an overall accuracy of 85% as well as a Kappa coefficient of 0.82. Compared with the traditional machine learning methods (e.g., random forest (RF) and support vector machine (SVM)), the proposed method can still achieve better classification performance under the condition of a complex crop planting structure.

Multi-Temporal SAR Data Large-Scale Crop Mapping Based on U-Net Model

Accurate crop type mapping provides numerous benefits for a deeper understanding of food systems and yield prediction. Ever-increasing big data, easy access to high-resolution imagery, and cloud-based analytics platforms like Google Earth Engine have drastically improved the ability for scientists to advance data-driven agriculture with improved algorithms for crop type mapping using remote sensing, computer vision, and machine learning. Crop type mapping techniques mainly relied on standalone SAR and optical imagery, few studies investigated the potential of SAR-optical data fusion, coupled with virtual constellation, and 3-dimensional (3D) deep learning networks. To this extent, we use a deep learning approach that utilizes the denoised backscatter and texture information from multi-temporal Sentinel-1 SAR data and the spectral information from multi-temporal optical Sentinel-2 data for mapping ten different crop types, as well as water, soil and urban area. Multi-temporal Sentinel-1 data was fused with multi-temporal optical Sentinel-2 data in an effort to improve classification accuracies for crop types. We compared the results of the 3D U-Net to the state-of-the-art deep learning networks, including SegNet and 2D U-Net, as well as commonly used machine learning method such as Random Forest. The results showed (1) fusing multi-temporal SAR and optical data yields higher training overall accuracies (OA) (3D U-Net 0.992, 2D U-Net 0.943, SegNet 0.871) and testing OA (3D U-Net 0.941, 2D U-Net 0.847, SegNet 0.643) for crop type mapping compared to standalone multi-temporal SAR or optical data (2) optical data fused with denoised SAR data via a denoising convolution neural network (OA 0.912) performed better for crop type mapping compared to optical data fused with boxcar (OA 0.880), Lee (OA 0.881), and median (OA 0.887) filtered SAR data and (3) 3D convolutional neural networks perform better than 2D convolutional neural networks for crop type mapping (SAR OA 0.912, optical OA 0.937, fused OA 0.992).

Sentinel SAR-optical fusion for crop type mapping using deep learning and Google Earth Engine

With the increasing temporal resolution of space-borne SAR, large amounts of intensity data are now available for continues land observations. Previous researches proved the effectiveness of multitemporal SAR in land classification, but the characterizations of temporal information were still inadequate. In this paper, we proposed a crop classification scheme, which made full use of multitemporal SAR backscattering responses. In this method, the temporal intensity models were established by the K-means clustering method. The intensity vectors were treated as input features, and the mean intensity vectors of cluster centers were regarded as the temporal models. The temporal models summarized the backscatter evolutions of crops and were utilized as the criterion for crop discrimination. The spectral similarity value (SSV) measure was introduced from hyperspectral image processing for temporal model matching. The unlabeled pixel was assigned to the class to which the temporal model with the highest similarity belonged. Two sets of Sentinel-1 SAR time-series data were used to illustrate the effectiveness of the proposed method. The comparison between SSV and other measures demonstrated the superiority of SSV in temporal model matching. Compared with the decision tree (DT) and naive Bayes (NB) classifiers, the proposed method achieved the best overall accuracies in both VH and VV bands. For most crops, it either obtained the best accuracies or achieved comparable accuracies to the best ones, which illustrated the effectiveness of the proposed method.

Crop Classification Based on Temporal Information Using Sentinel-1 SAR Time-Series Data

Timely and accurate large-scale water body mapping and dynamic monitoring are of great significance for water resource planning, flood control, and disaster reduction applications. Synthetic aperture radar (SAR) systems have the characteristics of strong operability, wide coverage, and all-weather data availability, and play a key role in large-scale water monitoring applications. However, there are still some challenges in the application of highly efficient, high-precision water extraction and dynamic monitoring methods. In this paper, a framework for the automatic extraction and long-term change monitoring of water bodies is proposed. First, a multitemporal water sample dataset is produced based on the bimodal threshold segmentation method. Second, attention block and pyramid module are introduced into the UNet (encoder-decoder) model to construct a robust water extraction network (PA-UNet). Then, GIS modeling is used for the automatic postprocessing of the water extraction results. Finally, the results are mapped and statistically analyzed. The whole process realizes end-to-end input and output. Sentinel-1 data covering Dongting Lake and Poyang Lake are selected for water extraction and dynamic monitoring analysis from 2017 to 2020, and Sentinel-2 images from a similar time frame are selected for verification. The results show that the proposed framework can realize high-precision (the extraction accuracy is higher than 95%), highly efficient automatic water extraction. Multitemporal monitoring results show that Dongting Lake and Poyang Lake fluctuate most in April, July, and November in 2017, 2019, and 2020, and the change trends of the two lakes are the same.

Multitemporal Water Extraction of Dongting Lake and Poyang Lake Based on an Automatic Water Extraction and Dynamic Monitoring Framework

H9N2 avian influenza viruses are widely prevalent in birds and pose an increasing threat to humans because of their enhanced virulence and transmissibility in mammals. Active surveillance on the pr...

https://www.tandfonline.com/doi/pdf/10.1080/22221751.2021.1999778

Molecular characterization, receptor binding property, and replication in chickens and mice of H9N2 avian influenza viruses isolated from chickens, peafowls, and wild birds in eastern China.

A few previous studies have illustrated the potentials of compact polarimetric Synthetic Aperture Radar (CP SAR) in ship detection. In this paper, we design a ship detection algorithm of CP SAR from the perspective of computer vision. A ship detection algorithm using the pulsed cosine transform (PCT) visual attention model is proposed to suppress background clutter and highlight conspicuous ship targets. It is the first time that a visual attention model is introduced to CP SAR application. The proposed algorithm is a quick and complete framework for practical use. Polarimetric features—the relative phase δ and volume scattering component—are extracted from m-δ decomposition to eliminate false alarms and modify the PCT model. The constant false alarm rate (CFAR) algorithm based on lognormal distribution is adopted to detect ship targets, after a clutter distribution fitting procedure of the modified saliency map. The proposed method is then tested on three simulated circular-transmit-linear-receive (CTLR) mode images, which covering East Sea of China. Compared with the detection results of SPAN and the saliency map with only single-channel amplitude, the proposed method achieves the highest detection rates and the lowest misidentification rate and highest figure of merit, proving the effectiveness of polarimetric information of compact polarimetric SAR ship detection and the enhancement from the visual attention model.

Lu Xu

Papers

Multi-Temporal SAR Data Large-Scale Crop Mapping Based on U-Net Model

Crop Classification Based on Temporal Information Using Sentinel-1 SAR Time-Series Data

Multitemporal Water Extraction of Dongting Lake and Poyang Lake Based on an Automatic Water Extraction and Dynamic Monitoring Framework

Molecular characterization, receptor binding property, and replication in chickens and mice of H9N2 avian influenza viruses isolated from chickens, peafowls, and wild birds in eastern China.

Compact Polarimetric SAR Ship Detection with m-δ Decomposition Using Visual Attention Model