N
N. L. Podkolodny
Researcher at Russian Academy of Sciences
Publications - 21
Citations - 2140
N. L. Podkolodny is an academic researcher from Russian Academy of Sciences. The author has contributed to research in topics: DNA binding site & Gene. The author has an hindex of 13, co-authored 20 publications receiving 2113 citations. Previous affiliations of N. L. Podkolodny include Novosibirsk State University.
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Journal ArticleDOI
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
T. Heinemeyer,Edgar Wingender,Ingmar Reuter,Henning Hermjakob,Alexander E. Kel,O. V. Kel,Elena V. Ignatieva,E. A. Ananko,O. A. Podkolodnaya,Fedor A. Kolpakov,N. L. Podkolodny,Nikolay A. Kolchanov +11 more
TL;DR: The quantitative and qualitative changes of all three databases and connected programs are described.
Journal ArticleDOI
Transcription Regulatory Regions Database (TRRD): its status in 2002
Nikolay A. Kolchanov,Elena V. Ignatieva,E. A. Ananko,O. A. Podkolodnaya,I. L. Stepanenko,Tatyana I. Merkulova,M. A. Pozdnyakov,N. L. Podkolodny,A. N. Naumochkin,A. G. Romashchenko +9 more
TL;DR: Transcription Regulatory Regions Database (TRRD) is an informational resource containing an integrated description of the gene transcription regulation that contains only experimental data that are inputted into the database through annotating scientific publication.
Journal ArticleDOI
Transcription Regulatory Regions Database (TRRD): its status in 2000
Nikolay A. Kolchanov,O. A. Podkolodnaya,E. A. Ananko,Elena V. Ignatieva,I. L. Stepanenko,Olga V. Kel-Margoulis,A. E. Kel,T. I. Merkulova,T. N. Goryachkovskaya,T. V. Busygina,Fedor A. Kolpakov,N. L. Podkolodny,A. N. Naumochkin,I. M. Korostishevskaya,A. G. Romashchenko,G C Overton +15 more
TL;DR: The current release, TRRD 4.2.5, comprises the description of 760 genes, 3403 expression patterns, and >4600 regulatory elements including 3604 transcription factor binding sites, 600 promoters and 152 enhancers.
Journal ArticleDOI
Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.
TL;DR: Nucleosome packaging density was analyzed for different functional types of human promoters and it was found that in promoters of tissue-specific genes, the nucleosome formation potential was essentially higher than in genes expressed in many tissues, or housekeeping genes.
Journal ArticleDOI
Transcription Regulatory Regions Database (TRRD):its status in 1999.
Nikolay A. Kolchanov,E. A. Ananko,O. A. Podkolodnaya,Elena V. Ignatieva,I. L. Stepanenko,Olga V. Kel-Margoulis,Alexander E. Kel,Tatyana I. Merkulova,T. N. Goryachkovskaya,T. V. Busygina,Fedor A. Kolpakov,N. L. Podkolodny,A. N. Naumochkin,A. G. Romashchenko +13 more
TL;DR: Release 4.1 of TRRD offers a number of significant improvements, in particular, a more detailed description of transcription factor binding sites, transcription factors per se, and gene expression patterns in a computer-readable format.