O
Olga Ponomarova
Researcher at University of Massachusetts Medical School
Publications - 18
Citations - 1175
Olga Ponomarova is an academic researcher from University of Massachusetts Medical School. The author has contributed to research in topics: Medicine & Metabolic pathway. The author has an hindex of 7, co-authored 14 publications receiving 831 citations.
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Journal ArticleDOI
Metabolic dependencies drive species co-occurrence in diverse microbial communities.
Aleksej Zelezniak,Sergej Andrejev,Olga Ponomarova,Daniel R. Mende,Peer Bork,Kiran Raosaheb Patil +5 more
TL;DR: It is shown that interspecies metabolic exchanges are widespread in natural communities, and that such exchanges can provide group advantage under nutrient-poor conditions, and highlight metabolic dependencies as a major driver of species co-occurrence.
Journal ArticleDOI
Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow
Olga Ponomarova,Natalia Gabrielli,Daniel C. Sévin,Michael Mülleder,Katharina Zirngibl,Katsiaryna Bulyha,Sergej Andrejev,Eleni Kafkia,Athanasios Typas,Uwe Sauer,Markus Ralser,Kiran Raosaheb Patil +11 more
TL;DR: It is shown how yeast enables growth of lactic acid bacteria through endogenous, multi-component, cross-feeding in a readily established community, and how nitrogen overflow by yeast benefits L. plantarum in grape juice, and contributes to emergence of mutualism with L. lactis in a medium with lactose.
Journal ArticleDOI
Metabolic interactions in microbial communities: untangling the Gordian knot.
TL;DR: While exhaustive description of metabolic networks operating in natural systems is a task for the future, the battle of today is divided between detailed characterizations of small, reduced complexity microbial consortia, and focusing on particular metabolic aspects of natural ecosystems.
Journal ArticleDOI
Saccharomyces cerevisiae metabolism in ecological context.
TL;DR: A brief review of the genotypic and phenotypic peculiarities of S. cerevisiae in the context of its social lifestyle beyond laboratory environments is presented.
Posted ContentDOI
WormPaths: Caenorhabditis elegans metabolic pathway annotation and visualization.
Melissa D. Walker,Gabrielle E. Giese,Amy D. Holdorf,Sushila Bhattacharya,Cédric Diot,Aurian P. García-González,Brent B. Horowitz,Yong-Uk Lee,Thomas Leland,Xuhang Li,Zeynep Mirza,Huimin Na,Shivani Nanda,Olga Ponomarova,Hefei Zhang,Jingyan Zhang,L. Safak Yilmaz,Albertha J.M. Walhout +17 more
TL;DR: WormPaths as mentioned in this paper is composed of two parts: 1) the careful manual annotation of metabolic genes into pathways, categories and levels, and 2) 66 pathway maps that include metabolites, metabolite structures, genes, reactions, and pathway connections between maps.