: The unpolarized absorption and circular dichroism spectra of the fundamental vibrational transitions of the chiral molecule, 4-methyl-2-oxetanone, are calculated ab initio. Harmonic force fields are obtained using Density Functional Theory (DFT), MP2, and SCF methodologies and a 5S4P2D/3S2P (TZ2P) basis set. DFT calculations use the Local Spin Density Approximation (LSDA), BLYP, and Becke3LYP (B3LYP) density functionals. Mid-IR spectra predicted using LSDA, BLYP, and B3LYP force fields are of significantly different quality, the B3LYP force field yielding spectra in clearly superior, and overall excellent, agreement with experiment. The MP2 force field yields spectra in slightly worse agreement with experiment than the B3LYP force field. The SCF force field yields spectra in poor agreement with experiment.The basis set dependence of B3LYP force fields is also explored: the 6-31G* and TZ2P basis sets give very similar results while the 3-21G basis set yields spectra in substantially worse agreements with experiment. jg

Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields

Electrochemical degradation of pyridine by Ti/SnO2–Sb tubular porous electrode

Structural, spectral, electrochemical and DFT studies of two mononuclear manganese(II) and zinc(II) complexes

The present study reports the theoretical and experimental investigations of linear and nonlinear optical (static and dynamic) properties of 3-(4-methoxyphenyl)-1-(4-nitrophenyl)prop-2-en-1-one (MNC). The crystal structure was confirmed from powder X-ray diffraction (PXRD) analysis and evaluated the crystalline quality using high-resolution X-ray diffraction (HRXRD). Linear absorption and fluorescence spectra were recorded and the optical band gap was determined by Tauc’s relation. Third-order nonlinear optical (NLO) characteristics along with optical limiting behavior were explored using the femtosecond (fs) Z-scan technique at 800 and 900 nm wavelengths (Ti: sapphire laser, 150 fs, 80 MHz). The experimental results are supported by theoretical calculations obtained from the density functional theory (DFT). The optimized geometry, linear optical absorption, HOMO-LUMO energy gap, molecular electrostatic potential (MEP), dipole moments and global chemical reactivity descriptors (GCRD) were computed by employing B3LYP/6-311+G(d) level of theory. The static and dynamic linear polarizability (α), first hyperpolarizability (β) and second hyperpolarizability (γ) components were calculated using time-dependent Hartree–Fock (TDHF) method. The computed first hyperpolarizability β(−2ω;ω,ω) at 1064 nm wavelength was found to be 55 times greater than that of urea standard. The experimental and calculated dynamic molecular second hyperpolarizabilities γ(−3ω;ω,ω,ω) are in good accordance at 800 and 900 nm wavelengths.

Experimental and computational studies on second-and third-order nonlinear optical properties of a novel D-π-A type chalcone derivative: 3-(4-methoxyphenyl)-1-(4-nitrophenyl) prop-2-en-1-one

Mapping surface hydrophobic interactions in proteins is key to understanding molecular recognition, biological functions, and is central to many protein misfolding diseases. Herein, we report synthesis and application of new BODIPY-based hydrophobic sensors (HPsensors) that are stable and highly fluorescent for pH values ranging from 7.0 to 9.0. Surface hydrophobic measurements of proteins (BSA, apomyoglobin, and myoglobin) by these HPsensors display much stronger signal compared to 8-anilino-1-naphthalene sulfonic acid (ANS), a commonly used hydrophobic probe; HPsensors show a 10- to 60-fold increase in signal strength for the BSA protein with affinity in the nanomolar range. This suggests that these HPsensors can be used as a sensitive indicator of protein surface hydrophobicity. A first principle approach is used to identify the molecular level mechanism for the substantial increase in the fluorescence signal strength. Our results show that conformational change and increased molecular rigidity of the dye due to its hydrophobic interaction with protein lead to fluorescence enhancement.

/pdf/bodipy-based-fluorescent-probes-for-sensing-protein-surface-ct0wqe682h.pdf

BODIPY-Based Fluorescent Probes for Sensing Protein Surface-Hydrophobicity.

Synthesis, spectroscopic characterization, second and third-order nonlinear optical properties, and DFT calculations of a novel Mn(II) complex

Theoretical investigation of 5-(2-acetoxyethyl)-6-methylpyrimidin-2,4-dione: conformational study, NBO and NLO analysis, molecular structure and NMR spectra.

Quantum chemical characterization of N-(2-hydroxybenzylidene)acetohydrazide (HBAH): a detailed vibrational and NLO analysis.

Crystal structure and spectroscopic characterization of (E)-2-(((4-bromo-2-(trifluoromethoxy)phenyl)imino)methyl)-4-nitrophenol: A combined experimental and computational study

Ömer Tamer

Papers

Synthesis, spectroscopic characterization, second and third-order nonlinear optical properties, and DFT calculations of a novel Mn(II) complex

Theoretical investigation of 5-(2-acetoxyethyl)-6-methylpyrimidin-2,4-dione: conformational study, NBO and NLO analysis, molecular structure and NMR spectra.

Quantum chemical characterization of N-(2-hydroxybenzylidene)acetohydrazide (HBAH): a detailed vibrational and NLO analysis.

Crystal structure and spectroscopic characterization of (E)-2-(((4-bromo-2-(trifluoromethoxy)phenyl)imino)methyl)-4-nitrophenol: A combined experimental and computational study

A cobalt (II) complex with 6-methylpicolinate: Synthesis, characterization, second- and third-order nonlinear optical properties, and DFT calculations