Because freshwater covers such a small fraction of the Earth’s surface area, inland freshwater ecosystems (particularly lakes, rivers, and reservoirs) have rarely been considered as potentially important quantitative components of the carbon cycle at either global or regional scales. By taking published estimates of gas exchange, sediment accumulation, and carbon transport for a variety of aquatic systems, we have constructed a budget for the role of inland water ecosystems in the global carbon cycle. Our analysis conservatively estimates that inland waters annually receive, from a combination of background and anthropogenically altered sources, on the order of 1.9 Pg C y−1 from the terrestrial landscape, of which about 0.2 is buried in aquatic sediments, at least 0.8 (possibly much more) is returned to the atmosphere as gas exchange while the remaining 0.9 Pg y−1 is delivered to the oceans, roughly equally as inorganic and organic carbon. Thus, roughly twice as much C enters inland aquatic systems from land as is exported from land to the sea. Over prolonged time net carbon fluxes in aquatic systems tend to be greater per unit area than in much of the surrounding land. Although their area is small, these freshwater aquatic systems can affect regional C balances. Further, the inclusion of inland, freshwater ecosystems provides useful insight about the storage, oxidation and transport of terrestrial C, and may warrant a revision of how the modern net C sink on land is described.

/pdf/plumbing-the-global-carbon-cycle-integrating-inland-waters-1enndt5kqx.pdf

Plumbing the Global Carbon Cycle: Integrating Inland Waters into the Terrestrial Carbon Budget

The nuclear ribosomal internal transcribed spacer (ITS) region is the formal fungal barcode and in most cases the marker of choice for the exploration of fungal diversity in environmental samples. Two problems are particularly acute in the pursuit of satisfactory taxonomic assignment of newly generated ITS sequences: (i) the lack of an inclusive, reliable public reference data set and (ii) the lack of means to refer to fungal species, for which no Latin name is available in a standardized stable way. Here, we report on progress in these regards through further development of the UNITE database (http://unite.ut.ee) for molecular identification of fungi. All fungal species represented by at least two ITS sequences in the international nucleotide sequence databases are now given a unique, stable name of the accession number type (e.g. Hymenoscyphus pseudoalbidus|GU586904|SH133781.05FU), and their taxonomic and ecological annotations were corrected as far as possible through a distributed, third-party annotation effort. We introduce the term ‘species hypothesis’ (SH) for the taxa discovered in clustering on different similarity thresholds (97–99%). An automatically or manually designated sequence is chosen to represent each such SH. These reference sequences are released (http://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and in the QIIME pipeline. The system and the data will be updated automatically as the number of public fungal ITS sequences grows. We invite everybody in the position to improve the annotation or metadata associated with their particular fungal lineages of expertise to do so through the new Web-based sequence management system in UNITE.

http://web.stanford.edu/~kpeay/papers/Koljalg_2013_MEC.pdf

Towards a unified paradigm for sequence-based identification of fungi

https://cbs.umn.edu/sites/cbs.umn.edu/files/public/downloads/Nguyenetal2015b.pdf

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Summary 1 Summary All plants in natural ecosystems appear to be symbiotic with fungal endophytes. This highly diverse group of fungi can have profound impacts on plant communities through increasing fitness by conferring abiotic and biotic stress tolerance, increasing biomass and decreasing water consumption, or decreasing fitness by altering resource allocation. Despite more than 100 yr of research resulting in thousands of journal articles, the ecological significance of these fungi remains poorly characterized. Historically, two endophytic groups (clavicipitaceous (C) and nonclavicipitaceous (NC)) have been discriminated based on phylogeny and life history traits. Here, we show that NC-endophytes represent three distinct functional groups based on host colonization and transmission, in planta biodiversity and fitness benefits conferred to hosts. Using this framework, we contrast the life histories, interactions with hosts and potential roles in plant ecophysiology of C- and NC-endophytes, and highlight several key questions for future work in endophyte biology.

https://courses.washington.edu/cfr523/documents/2009TansleyReview.pdf

Fungal endophytes: diversity and functional roles.

Arbuscular mycorrhiza (AM), a symbiosis between plants and members of an ancient phylum of fungi, the Glomeromycota, improves the supply of water and nutrients, such as phosphate and nitrogen, to the host plant. In return, up to 20% of plant-fixed carbon is transferred to the fungus. Nutrient transport occurs through symbiotic structures inside plant root cells known as arbuscules. AM development is accompanied by an exchange of signalling molecules between the symbionts. A novel class of plant hormones known as strigolactones are exuded by the plant roots. On the one hand, strigolactones stimulate fungal metabolism and branching. On the other hand, they also trigger seed germination of parasitic plants. Fungi release signalling molecules, in the form of 'Myc factors' that trigger symbiotic root responses. Plant genes required for AM development have been characterized. During evolution, the genetic programme for AM has been recruited for other plant root symbioses: functional adaptation of a plant receptor kinase that is essential for AM symbiosis paved the way for nitrogen-fixing bacteria to form intracellular symbioses with plant cells.

Arbuscular mycorrhiza: the mother of plant root endosymbioses.


 
 A description is provided for
 Puccinia calthicola
 parasitic on leaves of
 Caltha palustris
 . Some information on its taxonomy, morphology, associated organisms, habitats, dispersal and transmission and conservation status are given, along with details of its geographical distribution (Japan, Mongolia, Russia (Far East), Austria, Belgium, Bulgaria, Czech Republic, Denmark, Estonia, Finland, France, Germany, Hungary, Irish Republic, Italy, Latvia, Lithuania, Norway, Poland, Romania, Russia (Republic of Karelia, Republic of Mordovia), Spain, Sweden, Switzerland, Ukraine, UK, Canada (Alberta, Manitoba, Newfoundland, Ontario, Quebec, Saskatchewan), USA (Colorado, Iowa, Michigan, Minnesota, Washington, Wisconsin) and Argentina) and hosts (
 Caltha leptosepala, C. palustris, C. palustris
 var.
 barthei, C. palustris
 var.
 himalaica, C. palustris
 var.
 palustris, C. membranacea, C. palustris
 var.
 sibirica, C. sinogracilis
 and
 Caltha
 sp.).


Puccinia calthicola
 . [Descriptions of Fungi and Bacteria].


 
 A description is provided for
 Puccinia vincae
 found on
 Vinca major
 . Some information on its taxonomy, associated organisms, habitats, dispersal and transmission and conservation status are given, along with details of its geographical distribution (Algeria, Morocco, Armenia, Republic of Georgia, Iran, Iraq, Israel, Kyrgyzstan, Lebanon, Syria, Turkey, Uzbekistan, Portugal (Azores, Madeira), Spain (Canary Islands), Australia (South Australia), Cuba, Andorra, Austria, Belgium, Bosnia-Hercegovina, Bulgaria, Channel Islands, Croatia, Denmark, Estonia, France, Germany, Greece, Hungary, Irish Republic, Italy, Netherlands, Norway, Portugal, Romania, Russia (Republic of Dagestan), Slovakia, Slovenia, Spain, Switzerland, Ukraine, UK, Canada (Ontario, Quebec), Mexico, USA (California, Florida, Idaho, Illinois, Massachusetts, Michigan, Minnesota, New York, North Carolina, Oregon, Texas, Washington) and Brazil) and hosts (
 Vinca
 spp.).


Puccinia vincae
 . [Descriptions of Fungi and Bacteria].

Hypocopra Equorum


 
 A description is provided for
 Puccinia angelicae
 found parasitic on
 Angelica sylvestris
 . Some information on its taxonomy, morphology, associated organisms, habitats, dispersal and transmission and conservation status are given, along with details of its geographical distribution (Zimbabwe, Armenia, China (Jiangsu, Jiangxi, Jilin, Xinjiang), Republic of Georgia, India (Maharashtra, Uttarakhand), Iran, Japan, Kazakhstan (Almaty), Kyrgyzstan, Lebanon, Mongolia, Pakistan, Turkmenistan, Uzbekistan, Russia (Tiumen Oblast, Tomsk Oblast), Costa Rica, Austria, Belarus, Belgium, Bosnia-Hercegovina, Bulgaria, Croatia, Czech Republic, Denmark, Estonia, Finland, France, Germany, Hungary, Iceland, Irish Republic, Italy, Latvia, Lithuania, Netherlands, Norway, Poland, Portugal, Romania, Russia (Arkhangel Oblast, Stavropol Krai, Voronezh Oblast), Slovakia, Slovenia, Spain, Sweden, Switzerland, Ukraine, UK, Canada (Alberta, British Columbia, Manitoba, Ontario, Quebec), USA (Alaska, Arkansas, California, Connecticut, Idaho, Indiana, Michigan, Missouri, Montana, New York, Oregon, Pennsylvania, Washington, Wisconsin)) and hosts (
 Angelica
 spp. and other genera of Apiaceae).


Paul F. Cannon

Papers

Puccinia calthicola . [Descriptions of Fungi and Bacteria].

Puccinia vincae . [Descriptions of Fungi and Bacteria].

Hypocopra Equorum

Puccinia angelicae . [Descriptions of Fungi and Bacteria].

Ionomidotis fulvotingens . [Descriptions of Fungi and Bacteria].