抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

I. the origin of species by means of natural selection

Gene duplication provides raw material for functional innovation. Recent advances have shed light on two fundamental questions regarding gene duplication: which genes tend to undergo duplication? And how does natural selection subsequently act on them? Genomic data suggest that different gene classes tend to be retained after single-gene and whole-genome duplications. We also know that functional differences between duplicate genes can originate in several different ways, including mutations that directly impart new functions, subdivision of ancestral functions and selection for changes in gene dosage. Interestingly, in many cases the 'new' function of one copy is a secondary property that was always present, but that has been co-opted to a primary role after the duplication.

Turning a hobby into a job: how duplicated genes find new functions.

Long-distance dispersal (LDD) is central to species expansion following climate change, re-colonization of disturbed areas and control of pests1,2,3,4,5,6,7,8. The current paradigm is that the frequency and spatial extent of LDD events are extremely difficult to predict9,10,11,12. Here we show that mechanistic models coupling seed release and aerodynamics with turbulent transport processes provide accurate probabilistic descriptions of LDD of seeds by wind. The proposed model reliably predicts the vertical distribution of dispersed seeds of five tree species observed along a 45-m high tower in an eastern US deciduous forest. Simulations show that uplifting above the forest canopy is necessary and sufficient for LDD, hence, they provide the means to define LDD quantitatively rather than arbitrarily. Seed uplifting probability thus sets an upper bound on the probability of long-distance colonization. Uplifted yellow poplar seeds are on average lighter than seeds at the forest floor, but also include the heaviest seeds. Because uplifting probabilities are appreciable (as much as 1–5%), and tree seed crops are commonly massive, some LDD events will establish individuals that can critically affect plant dynamics on large scales.

/pdf/mechanisms-of-long-distance-dispersal-of-seeds-by-wind-4a6sdgfa8h.pdf

Mechanisms of long-distance dispersal of seeds by wind

The rice species Oryza sativa is considered to be a model plant because of its small genome size, extensive genetic map, relative ease of transformation and synteny with other cereal crops. Here we report the essentially complete sequence of chromosome 1, the longest chromosome in the rice genome. We summarize characteristics of the chromosome structure and the biological insight gained from the sequence. The analysis of 43.3 megabases (Mb) of non-overlapping sequence reveals 6,756 protein coding genes, of which 3,161 show homology to proteins of Arabidopsis thaliana, another model plant. About 30% (2,073) of the genes have been functionally categorized. Rice chromosome 1 is (G + C)-rich, especially in its coding regions, and is characterized by several gene families that are dispersed or arranged in tandem repeats. Comparison with a draft sequence indicates the importance of a high-quality finished sequence.

/pdf/the-genome-sequence-and-structure-of-rice-chromosome-1-4etydp0diz.pdf

The genome sequence and structure of rice chromosome 1

The fossil record is a unique source of evidence for important evolutionary phenomena such as transitions between major clades. Frustratingly, relevant fossils are still comparatively rare, most transitions have yet to be documented in detail and the mechanisms that underpin such events, typified by rapid large scale changes and for which microevolutionary processes seem insufficient, are still unclear. A new pterosaur (Mesozoic flying reptile) from the Middle Jurassic of China, Darwinopterus modularis gen. et sp. nov., provides the first insights into a prominent, but poorly understood transition between basal, predominantly long-tailed pterosaurs and the more derived, exclusively short-tailed pterodactyloids. Darwinopterus exhibits a remarkable ‘modular’ combination of characters: the skull and neck are typically pterodactyloid, exhibiting numerous derived character states, while the remainder of the skeleton is almost completely plesiomorphic and identical to that of basal pterosaurs. This pattern supports the idea that modules, tightly integrated complexes of characters with discrete, semi-independent and temporally persistent histories, were the principal focus of natural selection and played a leading role in evolutionary transitions.

/pdf/evidence-for-modular-evolution-in-a-long-tailed-pterosaur-4y2eb0s87g.pdf

Evidence for modular evolution in a long-tailed pterosaur with a pterodactyloid skull

Anatomy and systematics of the Confuciusornithidae (Theropoda, Aves) from the late Mesozoic of northeastern China. Bulletin of the AMNH ; no. 242

Non-avian theropod dinosaurs with preserved integumentary coverings are becoming more common1,2,3,4,5,6; but apart from the multiple specimens of Caudipteryx, which have true feathers2,7, animals that are reasonably complete and entirely articulated that show these structures in relation to the body have not been reported. Here we report on an enigmatic small theropod dinosaur that is covered with filamentous feather-like structures over its entire body.

The distribution of integumentary structures in a feathered dinosaur

Three-dimensional specimens of the volant fossil bird Gansus yumenensis from the Early Cretaceous Xiagou Formation of northwestern China demonstrate that this taxon possesses advanced anatomical features previously known only in Late Cretaceous and Cenozoic ornithuran birds. Phylogenetic analysis recovers Gansus within the Ornithurae, making it the oldest known member of the clade. The Xiagou Formation preserves the oldest known ornithuromorph-dominated avian assemblage. The anatomy of Gansus, like that of other non-neornithean (nonmodern) ornithuran birds, indicates specialization for an amphibious life-style, supporting the hypothesis that modern birds originated in aquatic or littoral niches.

https://science.sciencemag.org/content/sci/312/5780/1640.full.pdf

A nearly modern amphibious bird from the early cretaceous of northwestern China

A new ornithomimosaur from the Yixian Formation of Liaoning Province People's Republic of China is described. These beds are near the Jurassic-Cretaceous boundary. This specimen is interesting because it has several primitive characters for ornithomimosaurs such as teeth and a short first metacarpal. This taxon is placed in a phylogenetic analysis of Coelurosauria and shown to be near the base of the ornithomimosaur clade. Using this phylogeny we comment on the biogeographic history of this group.

/pdf/an-early-ostrich-dinosaur-and-implications-for-1gveb5gui0.pdf

Qiang Ji

Papers

Evidence for modular evolution in a long-tailed pterosaur with a pterodactyloid skull

Anatomy and systematics of the Confuciusornithidae (Theropoda, Aves) from the late Mesozoic of northeastern China. Bulletin of the AMNH ; no. 242

The distribution of integumentary structures in a feathered dinosaur

A nearly modern amphibious bird from the early cretaceous of northwestern China

An Early Ostrich Dinosaur and Implications for Ornithomimosaur Phylogeny