Production of haploid plants that inherit chromosomes from only one parent can greatly accelerate plant breeding. Haploids generated from a heterozygous individual and converted to diploid create instant homozygous lines, bypassing generations of inbreeding. Two methods are generally used to produce haploids. First, cultured gametophyte cells may be regenerated into haploid plants, but many species and genotypes are recalcitrant to this process. Second, haploids can be induced from rare interspecific crosses, in which one parental genome is eliminated after fertilization. The molecular basis for genome elimination is not understood, but one theory posits that centromeres from the two parent species interact unequally with the mitotic spindle, causing selective chromosome loss. Here we show that haploid Arabidopsis thaliana plants can be easily generated through seeds by manipulating a single centromere protein, the centromere-specific histone CENH3 (called CENP-A in human). When cenh3 null mutants expressing altered CENH3 proteins are crossed to wild type, chromosomes from the mutant are eliminated, producing haploid progeny. Haploids are spontaneously converted into fertile diploids through meiotic non-reduction, allowing their genotype to be perpetuated. Maternal and paternal haploids can be generated through reciprocal crosses. We have also exploited centromere-mediated genome elimination to convert a natural tetraploid Arabidopsis into a diploid, reducing its ploidy to simplify breeding. As CENH3 is universal in eukaryotes, our method may be extended to produce haploids in any plant species.

Haploid plants produced by centromere-mediated genome elimination.

Uniparental chromosome elimination occurs in several interspecific hybrids of plants. We studied the mechanism underlying selective elimination of the paternal chromosomes during the early development of Hordeum vulgare × Hordeum bulbosum embryos. The following conclusions regarding the role of the centromere-specific histone H3 variant (CENH3) in the process of chromosome elimination were drawn: (i) centromere inactivity of H. bulbosum chromosomes triggers the mitosis-dependent process of uniparental chromosome elimination in unstable H. vulgare × H. bulbosum hybrids; (ii) centromeric loss of CENH3 protein rather than uniparental silencing of CENH3 genes causes centromere inactivity; (iii) in stable species combinations, cross-species incorporation of CENH3 occurs despite centromere-sequence differences, and not all CENH3 variants get incorporated into centromeres if multiple CENH3s are present in species combinations; and (iv) diploid barley species encode two CENH3 variants, the proteins of which are intermingled within centromeres throughout mitosis and meiosis.

https://www.pnas.org/content/pnas/108/33/E498.full.pdf

Loss of centromeric histone H3 (CENH3) from centromeres precedes uniparental chromosome elimination in interspecific barley hybrids

Complete uniparental chromosome elimination occurs in several interspecific hybrids of plants. We studied the mechanisms underlying selective elimination of the paternal chromosomes during the development of wheat (Triticum aestivum) x pearl millet (Pennisetum glaucum) hybrid embryos. All pearl millet chromosomes were eliminated in a random sequence between 6 and 23 d after pollination. Parental genomes were spatially separated within the hybrid nucleus, and pearl millet chromatin destined for elimination occupied peripheral interphase positions. Structural reorganization of the paternal chromosomes occurred, and mitotic behavior differed between the parental chromosomes. We provide evidence for a novel chromosome elimination pathway that involves the formation of nuclear extrusions during interphase in addition to postmitotically formed micronuclei. The chromatin structure of nuclei and micronuclei is different, and heterochromatinization and DNA fragmentation of micronucleated pearl millet chromatin is the final step during haploidization.

Uniparental Chromosome Elimination at Mitosis and Interphase in Wheat and Pearl Millet Crosses Involves Micronucleus Formation, Progressive Heterochromatinization, and DNA Fragmentation

The segregation and differentiation of the germ and somatic cell lines in animal embryos represent one of the basic events in cell and developmental biology and has attracted classical and contemporary researchers alike. The process of germ line-soma segregation singles out cells which have to maintain the genealogy and those which build up the individual organism. This event often constitutes the first sign of differentiation in early cleavage stages of a developing embryo. Understanding, in molecular-genetic terms, such a basic developmental process might give us some clues to solve the most important problem in developmental biology, i.e., how cells become different during development. Although this review will focus on a discussion of germ line versus soma differentiation, it should be emphasized that the underlying mechanism(s) involved in the differentiation of the divergent somatic cell lines may in principle be similar.

The Differentiation of Germ and Somatic Cell Lines in Nematodes

Chromosome elimination through chromosome loss and partial deletion is known to be one of the causes of embryonic inviability in some salmonid interspecific hybrids. Using fluorescence in situ hybridization and related techniques, including whole chromosome painting and comparative genomic hybridization, parental origin of eliminated chromosomes was identified in the inviable hybrids between masu salmon (Ms, Oncorhynchus masou) female and rainbow trout (Rb, O. mykiss) male at the early embryonic stage prior to death. In these hybrids, the haploid Rb chromosome number decreased to nearly half, whereas the Ms chromosomes were retained as one or occasionally two full haploid complements. The Rb chromosomes were also involved in the frequently observed fragments and micronuclei. Whereas the occurrence of fragments was constant throughout the observed period, chromosome loss occurred mainly from just after fertilization to the blastulae stage. In tissue sections and cell spreads of late blastula, some Rb chromosomes were trapped in the midzone from ana- to telophase, resulting in micronuclei at the subsequent interphase. Micronuclei and mitotic abnormalities were also observed in the androgenetic haploid hybrids. However, such abnormalities were seldom or never observed in the viable reciprocal hybrids. The present findings suggest that the paternal Rb chromosomes in the inviable hybrids are preferentially eliminated through mitotic abnormalities during early embryogenesis, owing to a possible incompatibility between the maternal Ms cytoplasm and paternal Rb genome.

Uniparental chromosome elimination in the early embryogenesis of the inviable salmonid hybrids between masu salmon female and rainbow trout male

Chromosome elimination was studied in squash preparations of seeds of two different Hordeum crosses between diploid parents whose karyotypes allowed identification with unusual ease for Hordeum of the parental origins of the chromosomes being eliminated in each mitosis in embryos and endosperms. In both crosses, the mean chromosome number in hybrid tissues fell during several mitoses until nuclei became haploid in embryos and diploid in endosperms. Elimination was always uniparental, i.e. all chromosomes eliminated from a given tissue in a given cross were from the same parent. In H. marinum x H. vulgare cv. Tuleen 346, elimination involved the Tuleen 346 genome in the endosperm, but the H. marinum genome in the embryo. This is a good example of alternative elimination, i.e. uniparental elimination involving different parental genomes in different tissue of the same cross. In Tuleen 346 x H. bulbosum, the H. bulbosum genome was eliminated from both embryos and endosperms. — In H. marinum x Tuleen 346 endosperms, eliminated Tuleen 346 chromosomes were individually identifiable and tended to be eliminated in non-random order: the nucleolar chromosomes, T3-7 and T6-2 first, followed by chromosomes T5-1, T7-3, T2-6 and 4, with chromosome T1-5 last. — The nucleolar constrictions were expressed in eliminated satellite chromosomes from Tuleen 346, but not in those from H. marinum or H. bulbosum. Eliminated chromosomes differed from retained ones in having smaller centromeres and tending before, during and after elimination to occupy more peripheral regions of mitoses. Elimination may result primarily from specific suppression of genes involved in centromere function, perhaps by DNA methylation.

R. A. Finch

Papers

Tissue-specific elimination of alternative whole parental genomes in one barley hybrid