Many Gram-negative bacteria regulate gene expression in response to their population size by sensing the level of acyl-homoserine lactone signal molecules which they produce and liberate to the environment. We have developed an assay for these signals that couples separation by thin-layer chromatography with detection using Agrobacterium tumefaciens harboring lacZ fused to a gene that is regulated by autoinduction. With the exception of N-butanoyl-l-homoserine lactone, the reporter detected acyl-homoserine lactones with 3-oxo-, 3-hydroxy-, and 3-unsubstituted side chains of all lengths tested. The intensity of the response was proportional to the amount of the signal molecule chromatographed. Each of the 3-oxo- and the 3-unsubstituted derivatives migrated with a unique mobility. Using the assay, we showed that some bacteria produce as many as five detectable signal molecules. Structures could be assigned tentatively on the basis of mobility and spot shape. The dominant species produced by Pseudomonas syringae pv. tabaci chromatographed with the properties of N-(3-oxohexanoyl)-l-homoserine lactone, a structure that was confirmed by mass spectrometry. An isolate of Pseudomonas fluorescens produced five detectable species, three of which had novel chromatographic properties. These were identified as the 3-hydroxy- forms of N-hexanoyl-, N-octanoyl-, and N-decanoyl-l-homoserine lactone. The assay can be used to screen cultures of bacteria for acyl-homoserine lactones, for quantifying the amounts of these molecules produced, and as an analytical and preparative aid in determining the structures of these signal molecules.

Detecting and characterizing N-acyl-homoserine lactone signal molecules by thin-layer chromatography

Many Gram-negative bacteria regulate gene expression in response to their population size by sensing the level of acyl-homoserine lactone signal molecules which they produce and liberate to the environment. We have developed an assay for these signals that couples separation by thin-layer chromatography with detection using Agrobacterium tumefa- ciens harboring lacZ fused to a gene that is regulated by autoinduction. With the exception of N-butanoyl-L-homo- serine lactone, the reporter detected acyl-homoserine lactones with 3-oxo-, 3-hydroxy-, and 3-unsubstituted side chains of all lengths tested. The intensity of the response was proportional to the amount of the signal molecule chromatographed. Each of the 3-oxo- and the 3-unsubstituted derivatives migrated with a unique mobility. Using the assay, we showed that some bacteria produce as many as five detectable signal molecules. Structures could be assigned tentatively on the basis of mobility and spot shape. The dominant species produced by Pseudomonas syringae pv. tabaci chromatographed with the properties of N-(3-oxohexanoyl)-L-homoserine lactone, a structure that was confirmed by mass spectrometry. An isolate of Pseudomonas fluorescens produced five detectable species, three of which had novel chromatographic properties. These were identified as the 3-hydroxy- forms of N-hexanoyl-, N-octanoyl-, and N-decanoyl-L-homoserine lactone. The assay can be used to screen cultures of bacteria for acyl-homoserine lactones, for quantifying the amounts of these molecules produced, and as an analytical and preparative aid in deter- mining the structures of these signal molecules.

Detecting and characterizing N-acyl-homoserine lactone signal molecules by thin-layer chromatography (autoinductionysignaling systemsyquorum sensingygene regulationydetection systems)

R meliloti strain 41 (Rm41) was shown to harbour two indigenous plasmids with molecular weights of 140 Mdal (pRmc41a) and more than 300 Mdal (pRme41b), respectively Using a heat-treatment procedure, derivatives of Rm41 defective in nodulation (Nod-) or nitrogen fixation (Fix-) have been readily obtained In some Nod- mutants the deletion of a segment of plasmid pRme41b was found

Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti.

Heme biosynthesis in Rhizobium. Identification of a cloned gene coding for delta-aminolevulinic acid synthetase from Rhizobium meliloti.

A 135 kb long segment of the symbiotic region of the Rhizobium meliloti megaplasmid was mapped with the help of a Rhizobium meliloti gene library, made in the cosmid vehicle pJB8. A set of overlapping cosmid clones was used to identify the inserts in R-primes carrying megaplasmid sections, and to map 20 deletion mutations and 24 insertion mutations with Nod- or Fix- phenotypes. This led to the identification of DNA regions carrying nod or fix (nif) genes. The results of this study correlate well with transcription data of nodule-specific expression of plasmid sequences. The nod mutations were localized in two groups. Using directed Tn5 mutagenesis, correlated physical-genetic maps for these regions were established. One nod gene cluster is about 2.5–3.0 kb in size and carries genes involved in root hair curling, a very early step in nodule formation. Mutations in these genes can be complemented by sym plasmids of other Rhizobium species, such as Rhizobium leguminosarum. We designate these genes as “common” nod genes because mutations in them can be complemented by plasmids derived from different Rhizobium strains. The other nod gene cluster consists of a 2 kb and a 1 kb long DNA segment, separated by a 1 kb region nonessential for nodulation. These nod genes are probably involved in the host specificity of nodulation.

Physical and genetic analysis of a symbiotic region of Rhizobium meliloti: Identification of nodulation genes

Twenty-five mutants unable to utilize nitrate as sole nitrogen source were isolated from Rhizobium meliloti 41. These mutations mapped at four different sites, narA, narB, narC and narD; narB, C and D were located between trp-15 and ade-15 on the chromosome. NarA mutants were affected in assimilatory nitrate reduction but not in‘respiratory’ nitrate reduction and had methyl viologen-coupled nitrate reductase activity. NarB mutants were affected in both assimilatory and ‘respiratory’ nitrate reduction and lacked methyl viologen-coupled nitrate reductase activity. NarC and narD mutants were impaired not only in assimilatory and ‘respiratory’ nitrate reduction but lacked xanthine dehydrogenase activity as well. Acid-treated crude extracts of these two mutant classes were unable to restore NADPH-coupled nitrate reductase activity to the nit-1 mutant of Neurospora crassa, indicating the lack of active molybdenum cofactor. All mutants tested were effective in symbiotic plant tests and had normal nitrogenase activity, indicating that nitrogenase and nitrate reductase do not share the same molybdenum cofactor.

Tamás Forrai

Papers

Genetic and Biochemical Analysis of Mutants Affected in Nitrate Reduction in Rhizobium meliloti