Timothy H. Wu

TL;DR: ChIPseek is presented, a web-based tool for ChIP data analysis providing summary statistics in graphs and offering several commonly demanded analyses, and the analysis tools built into ChIPseek, especially the ones for selecting and examine a subset of peaks from ChIPData, provides invaluable helps for exploring the high through-put data from either ChIP-seq or ChIP

TL;DR: FastAnnotator is an automated annotation web tool designed to efficiently annotate sequences with their gene functions, enzyme functions or domains and is useful in transcriptome studies and especially for those focusing on non-model organisms or metatranscriptomes.

TL;DR: It is demonstrated that FunctionAnnotator can efficiently annotate transcriptomes and greatly benefits studies focusing on non-model organisms or metatranscriptomes, and that it can estimate the taxonomic composition of environmental samples and assist in the identification of novel proteins by combining RNA-Seq data with proteomics technology.

TL;DR: DODO is shown to detect orthologs between two genomes in considerably shorter period of time than traditional methods of reciprocal best hits and it is more significant when analyzed a large number of genomes.

TL;DR: The results implicate that there are key differences in functions and evolutionary constraints among singleton genes or duplicated genes with or without alternative splicing incidences, and implies that the gene duplication and alternativesplicing may have different functional significance in the evolution of speciation diversity.