1980 Preface * 1999 Preface * 1999 Acknowledgements * Introduction * 1 Circular Logic * 2 Phase Singularities (Screwy Results of Circular Logic) * 3 The Rules of the Ring * 4 Ring Populations * 5 Getting Off the Ring * 6 Attracting Cycles and Isochrons * 7 Measuring the Trajectories of a Circadian Clock * 8 Populations of Attractor Cycle Oscillators * 9 Excitable Kinetics and Excitable Media * 10 The Varieties of Phaseless Experience: In Which the Geometrical Orderliness of Rhythmic Organization Breaks Down in Diverse Ways * 11 The Firefly Machine 12 Energy Metabolism in Cells * 13 The Malonic Acid Reagent ('Sodium Geometrate') * 14 Electrical Rhythmicity and Excitability in Cell Membranes * 15 The Aggregation of Slime Mold Amoebae * 16 Numerical Organizing Centers * 17 Electrical Singular Filaments in the Heart Wall * 18 Pattern Formation in the Fungi * 19 Circadian Rhythms in General * 20 The Circadian Clocks of Insect Eclosion * 21 The Flower of Kalanchoe * 22 The Cell Mitotic Cycle * 23 The Female Cycle * References * Index of Names * Index of Subjects

https://www.cambridge.org/core/services/aop-cambridge-core/content/view/596B270197FE27DE5FABB598B6210622/S0025557200150892a.pdf/div-class-title-span-class-italic-the-geometry-of-biological-time-span-by-a-t-winfree-pp-544-dm68-corrected-second-printing-1990-isbn-3-540-52528-9-springer-div.pdf

The geometry of biological time , by A. T. Winfree. Pp 544. DM68. Corrected Second Printing 1990. ISBN 3-540-52528-9 (Springer)

A new classification of Ericaceae is presented based on phylogenetic analyses of nuclear and chloroplast DNA sequence data, morphology, anatomy, and embryology. Eight subfamilies and 20 tribes are recognized. In this classification Epacridaceae are included as Styphelioideae and Empetraceae as tribe Empetreae within the Ericoideae. The herbaceous taxa previously recognized as Pyrolaceae and Monotropaceae by some authors are also included within Ericaceae, in the subfamily Monotropoideae. A key, morphological descriptions, and representative images are provided for all named groups. Two new combinations inKalmia (K. buxifolia andK. procumbens) are made, and three new taxa are described: Oligarrheneae, Richeeae, and Cosmelieae (all within Styphelioideae).

Phylogenetic Classification of Ericaceae: Molecular and Morphological Evidence

https://mmbr.asm.org/content/mmbr/58/3/330.full.pdf

Developmental decisions in Dictyostelium discoideum.

Oscillations and waves of cyclic AMP in Dictyostelium: a prototype for spatio-temporal organization and pulsatile intercellular communication.

Free-living amoebae of the cellular slime mouldDictyostelium discoideum aggregate when starved and give rise to a long and thin multicellular structure, the slug. The slug resembles a metazoan embryo, and as with other embryos it is possible to specify a fate map. In the case ofDictyostelium discoideum the map is especially simple: cells in the anterior fifth of the slug die and form a stalk while the majority of those in the posterior differentiate into spores. The genesis of this anterior-posterior distinction is the subject of our review. In particular, we ask: what are the relative roles of individual pre-aggregative predispositions and post-aggregative position in determining cell fate? We review the literature on the subject and conclude that both factors are important. Variations in nutritional status, or in cell cycle phase at starvation, can bias the probability that an amoeba differentiates into a stalk cell or a spore. On the other hand, isolates, or slug fragments, consisting of only prestalk cells or only prespore cells can regulate so as to result in a normal range of both cell types. We identify three levels of control, each being responsible for guiding patterning in normal development: (i) ‘coin tossing’, whereby a cell autonomously exhibits a preference for developing along either the stalk or the spore pathway with relative probabilities that can be influenced by the environment; (ii) ‘chemical kinetics’, whereby prestalk and prespore cells originate from undifferentiated amoebae on a probabilistic basis but, having originated, interact (e.g. via positive and negative feedbacks), and the interaction influences the possibility of conversion of one cell type into the other; and (iii) ‘positional information’, in which the spatial distribution of morphogens in the slug influences the pathway of differentiation. In the case of possibilities (i) and (ii), sorting out of like cell types leads to the final spatial pattern. In the case of possibility (iii), the pattern arisesin situ

/pdf/the-determination-of-spatial-pattern-in-dictyostelium-53r8nv0n4z.pdf

The determination of spatial pattern in Dictyostelium discoideum

Aggregation in the cellular slime moldDictyostelium discoideum is due to chemotaxis. The chemoattractant, cyclic AMP, is synthesised and released periodically by the cells. Externally applied periodic pulses of cyclic AMP can also induce differentiation in this organism. The present work examines the role of periodicityper se in cyclic AMP-mediated stimulation of cell differentiation. For this purpose we use Agip53, aDictyostelium mutant which does not develop beyond the vegetative state but can be made to aggregate and differentiate by reiterated applications of cyclic AMP. Importantly, Agip53 cells do not make or release any cyclic AMP themselves even in response to an increase in extracellular cyclic AMP. A comparison of the relative efficiencies of periodic and aperiodic stimulation shows that whereas the two patterns of stimulation are equally effective in inducing the formation of EDTA-stable cell contacts, periodic stimuli are significantly superior for inducing terminal differentiation. This suggests that there must be molecular pathways which can only function when stimulation occurs at regular intervals.

Periodic stimuli are more successful than randomly spaced ones for inducing development in Dictyostelium discoideum.

Exceptionally for a developing system, the pathways of intercellular communication are fairly well characterised in the cellular slime molds. This paper attempts to provide adaptive explanations for the origin of the following features and consequences of communication between cellular slime mold cells: the tendency to congregate, chemotaxis to a released signal, signal relay from cell to cell, oscillatory signal release and an invariant ratio of the terminally differentiated cell types. For the sake of specificity attention is directed at the speciesDictyostelium discoideum. Central to the entire analysis is the assumption that contiguous groups of feeding cells are, and in the past were, genetically identical. It is suggested that, in respect of most of the features listed above, the critical event which started things off must have been the acquisition by the cell membrane of permeability for a substance normally produced intracellularly as a response to the stress of starvation. An argument is presented for treating social behaviour in these organisms, and in particular the suicide by cells which differentiate into stalk, as an example of group selection.

The evolution of communication and social behaviour inDictyostelium discoideum

Regulating systems, that is, those which exhibit scale-invariant patterns in the adult, are supposed, to do so on account of interactions between cells during development. The nature of these interactions has to be such that the system of positional information (ldquomaprdquo) in the embryo also regulates. To our knowledge, this supposition regarding a regulating map has not been subjected to a direct test in any embryonic system. Here we do so by means of a simple and novel criterion and use it to examine tip regeneration in the mulicellular stage (slug) ofDictyostelium discoideum. When anterior, tip-containing fragments of slugs are amputated, a new tip spontaneously regenerates at the cut surface of the (remaining) posterior fragment. The time needed for regeneration to occur depends on the relative size of the amputated fragment but is independent of the total size of the slug. We conclude from this finding that there is at least one system underlying positional information in the slug which regulates.

/pdf/the-scale-invariance-of-spatial-patterning-in-a-developing-46varrasxy.pdf

The scale-invariance of spatial patterning in a developing system

We consider a simple and analytically solvable model for the spread of a transposable element which has deleterious effects on fitness. Two possible modes are treated, one in which transposition occurs in the newly fertilized zygote, and another in which transposition takes place only in the germ line. In effect, transposition precedes selection in the first case and follows it in the second. This has different long-term consequences depending on the rate of transposition and the values of the selection coefficients. Conditions are derived for the existence of a stable polymorphism with respect to element copy number; the conditions are more stringent in the first case than in the second. It is proved that a polymorphism is impossible unless the copy number decreases fitness in a more-than-muitiplicative fashion.

Vidyanand Nanjundiah

Papers

Periodic stimuli are more successful than randomly spaced ones for inducing development in Dictyostelium discoideum.

The evolution of communication and social behaviour inDictyostelium discoideum

The scale-invariance of spatial patterning in a developing system

Transposable element copy number and stable polymorphisms

Intercellular communication in the multicellular stage of Dictyostelium discoideum