scispace - formally typeset
Search or ask a question

Are S5H gene in rice and F3H gene in rice same? 


Best insight from top research papers

The S5H gene and F3H gene in rice are not the same. The S5H gene is associated with hybrid sterility in rice, specifically controlling female gamete sterility in indica/japonica hybrids . On the other hand, the F3H gene is related to whitebacked planthopper (WBPH) resistance in rice, playing a role in defending against biotic stress . The F3H gene is involved in the biosynthesis of compounds that protect plants from stress caused by pests like WBPH. Therefore, while the S5H gene is linked to hybrid sterility, the F3H gene is associated with resistance against pests like WBPH in rice, indicating distinct functions for these genes in different aspects of rice biology.

Answers from top 5 papers

More filters
Papers (5)Insight
Not addressed in the paper.
Not addressed in the paper.
Not addressed in the paper.
Not addressed in the paper.

Related Questions

What is the effect of alternative splicing in 5'UTR and in 3'UTR in arabidopsis?5 answersAlternative splicing in Arabidopsis affects the peroxisomal targeting sequences (PTS) of numerous genes. Specifically, alternative splicing impacts the C-terminal PTS1 of 66 genes and the N-terminal PTS2 of 5 genes, altering the targeting of proteins to peroxisomes. Additionally, alternative splicing plays a role in splice-site selection in Arabidopsis, as demonstrated by the prp8a mutant affecting splice-site utilization, resulting in differentially spliced transcripts and altered levels of transcripts. Furthermore, under glucose stress conditions, alternative splicing patterns change transcriptome-wide, with a significant number of differentially spliced events, including intron retention, observed in response to high glucose levels in Arabidopsis seedlings. These findings highlight the significant impact of alternative splicing on gene expression and protein targeting in Arabidopsis under various conditions.
What are the specific genetic markers that can be used to trace the origin of rice?5 answersSpecific genetic markers that can be utilized to trace the origin of rice include SSR markers, TE markers, ISSR, SRAP, and InDel markers. SSR markers have been extensively used for molecular characterization and discrimination of rice germplasm accessions, revealing genetic polymorphism and facilitating unambiguous identification. TE markers have shown promise in connecting genotype to phenotype, identifying genetic elements associated with agronomic traits, and indicating positive selection on TEs linked to specific traits in rice. Additionally, ISSR, SRAP, and InDel markers have been employed to evaluate the genetic relationship of Indochina rice varieties, demonstrating high levels of polymorphism and aiding in grouping accessions based on their geographic locations. These markers collectively offer valuable insights into the genetic diversity and origins of rice varieties.
Which genes are involved in embryo development in rice?5 answersGenes involved in embryo development in rice include P0 genes (OsP0A, OsP0B, OsP0C), OsCOP1, OsSYD, and OsBRM. P0 genes, especially OsP0A, play essential roles in rice embryo development, with knockout of OsP0A leading to embryo lethality. OsCOP1 regulates flavonoid biosynthesis and embryo structure formation in rice seeds. OsSYD and OsBRM, chromatin remodeling ATPases, are crucial for shoot establishment during embryogenesis, affecting OSH gene transcription. These genes collectively contribute to the intricate processes involved in embryo development in rice, highlighting the significance of their functions in ensuring proper growth and differentiation of rice embryos.
How to clone a yield-related gene using wild rice introgression lines?5 answersTo clone a yield-related gene using wild rice introgression lines, one can utilize the genetic diversity present in wild Oryza species, such as O. rufipogon, O. glaberrima, O. minuta, O. nivara, and O. glumaepatula. These wild species harbor valuable genes for enhancing yield and yield-related traits in cultivated rice. By generating introgression lines through backcrossing and selfing with marker-assisted selection, one can create hybrid segment introgression lines covering the whole genome of wild rice, facilitating the identification of allelic or new genes related to beneficial traits like high yield. These introgression lines can be evaluated for transgressive segregations and genetic variation, allowing for the mapping of quantitative trait loci (QTLs) associated with yield traits. Through this approach, specific genes like the MADS-box gene (TGW12) have been identified as potential candidates for improving traits like thousand-grain weight.
What are the major genes involved in rice grain aging?5 answersThe major genes involved in rice grain aging are the Rc gene, which encodes a basic helix-loop-helix transcription factor, and the genes associated with vitamin E homologues, including γ- and δ-tocopherols and α-tocotrienol. These genes play a role in determining the longevity of rice seeds during storage and are associated with germination parameters and seed viability. Additionally, genetic analysis has shown that relative germination percentage, relative germination rate, and relative germination index in rice grains are controlled by two major genes plus polygenes, with additive effects being larger than epistatic effects. These findings highlight the importance of genetic factors in rice grain aging and provide insights for future breeding strategies to improve grain yield.
What is flavonoid 3'-monooxygenase gene in wheat?3 answersFlavonoid 3'-monooxygenase (F3H) is a key enzyme in the flavonoid biosynthesis pathway in wheat. It is involved in the production of different pigments, including phlobaphene, proanthocyanidin, and anthocyanin. In wheat, there are multiple copies of the F3H gene, namely F3H-A1, F3H-B1, and F3H-D1, located on the telomeric region of the long arm of chromosomes 2A, 2B, and 2D, respectively. These genes are highly activated in red grains and coleoptiles, and their expression is controlled by flavonoid regulators in each tissue. The F3H gene copies F3H-A1, F3H-B1, and F3H-D1 are specifically transcribed in caryopsis pericarp, culm, coleoptile, and leaf colored with anthocyanins. The paralogous copy F3H-B2 in the B-genome is only expressed in the roots of wheat and is likely involved in the biosynthesis of uncolored flavonoid compounds unrelated to anthocyanin biosynthesis.

See what other people are reading

Important assays for saline stress ?
5 answers
Monitoring salt uptake and redistribution in plants is crucial for understanding and combating saline stress. Various assays have been developed for this purpose. Imaging Na-sensitive fluorescent probes and Na-ion selective microelectrodes offer non-destructive monitoring but are technically demanding. Full-length cDNA Over-eXpressor (FOX) gene hunting, combined with qRT-PCR analyses, provides a rapid system for screening salt-tolerance-related genes. Cell and tissue culture, particularly cell suspension cultures, offer a direct approach to studying metabolic changes under salt stress conditions. Additionally, assessing the physiological quality of seeds under different salt levels can reveal the impact of salinity on germination and vigor, highlighting membrane integrity changes in response to salt stress. These assays collectively contribute to understanding and addressing the challenges posed by saline stress in plants.
How does the use of PGPR in hydroponics compare to traditional soil-based systems?
4 answers
The utilization of Plant Growth-Promoting Rhizobacteria (PGPR) in hydroponics offers significant advantages over traditional soil-based systems. In hydroponics, the controlled atmosphere allows for maximizing the benefits of PGPR, enhancing plant growth, stress tolerance, and phytoremediation efficacy ^a1. Additionally, the sustainable use of space, reduced water consumption, absence of pesticides, and precise nutrient control in hydroponics contribute to its superiority over soil-based agriculture ^a1. Furthermore, the application of PGPR in hydroponics can lead to increased plant adaptation to environmental stresses like drought and salinity, minimizing damage and improving yield ^a4. The integration of PGPR in hydroponic systems aligns with the modern eco-friendly approach to agriculture, promoting plant health, nutrient uptake, and resistance to external stress factors ^a2.
Bacillus inoculation can enhance total soluble sugars in plant?
5 answers
Inoculation with Bacillus strains has been shown to enhance total soluble sugars in plants, contributing to improved growth and stress tolerance. Bacillus species like B. megaterium, B. mycoides PM35, and B. amyloliquefaciens have demonstrated the ability to increase soluble sugar content in plants under various stress conditions, such as salinity and drought. This increase in soluble sugars plays a crucial role in regulating plant metabolism, enhancing photosynthesis, and acting as osmoprotectants. The upregulation of stress-related genes and the promotion of sugar accumulation by Bacillus strains indicate their potential to positively influence plant growth and productivity by modulating sugar metabolism. Therefore, Bacillus inoculation can indeed enhance total soluble sugars in plants, providing a valuable strategy for improving plant performance under challenging environmental conditions.
What is the impact of bacillus inoculation on sugar content?
5 answers
Inoculation with Bacillus species, such as Bacillus subtilis, has shown significant positive impacts on sugar content in plants. Studies have demonstrated that Bacillus inoculation can enhance sugar metabolism, leading to increased sugar accumulation in plants. Specifically in sugarcane, inoculation with Bacillus subtilis has been found to improve sucrose concentration in the stalks, resulting in higher sugar content. Additionally, combined inoculation with Bacillus subtilis and other plant growth-promoting bacteria has shown to increase sugar yield in sugarcane crops, even allowing for reduced phosphate fertilization while maintaining high sugar production levels. These findings highlight the potential of Bacillus inoculation as a strategy to boost sugar content in crops like sugarcane.
APX gene in abiotic stress in cauliflower and grapes?
5 answers
APX genes play crucial roles in plant responses to abiotic stress. In cauliflower, mutagenesis and transformation techniques were utilized to enhance resistance to stress factors like drought, salinity, and low temperatures. The study demonstrated stable resistance traits in mutant lines with increased proline content and improved frost resistance. Additionally, the integration of stress genes like APX into cauliflower plants through Agrobacterium-mediated transformation enhanced salt tolerance. In grapes, the WRKY3 gene was found to respond to salt and drought stress, leading to improved stress tolerance when constitutively expressed in Arabidopsis thaliana. The overexpression of VlWRKY3 resulted in enhanced resistance to abiotic stress at various growth stages and altered expression of stress-responsive genes, highlighting its importance in stress tolerance mechanisms.
What is effect of fungal disease on plant morhology and physiology?
5 answers
Fungal diseases significantly impact plant morphology and physiology. These diseases are caused by various pathogens like Pseudocercospora fijiensis, Botryosphaeria stevensii, Hypoxylon mediterraneum, and Phytophthora cinnamomi, leading to reduced growth, altered physiological parameters, and decreased photosynthetic efficiency. Fungal pathogens induce changes in leaf biochemical and biophysical parameters, such as decreased chlorophyll content and increased brown pigments, affecting plant health. The defense mechanisms of plants against fungal stress involve stress proteins, resistance genes, antimicrobial peptides, and RNA interference pathways, which play crucial roles in combating pathogen attacks and developing resistance in plants. Understanding these effects is vital for early detection and management of fungal diseases to mitigate their detrimental impact on plant growth and productivity.
How does RNA sequencing work in practice?
5 answers
RNA sequencing (RNA-seq) involves several key steps for analyzing gene expression. Initially, experimental design, quality control, read alignment, and quantification of gene and transcript levels are conducted. Visualization, differential gene expression, alternative splicing, functional analysis, gene fusion detection, and eQTL mapping follow. Single-cell RNA sequencing (scRNA-seq) has enabled the study of individual cells, revolutionizing biological research. Recent advancements include direct RNA sequencing using nanopores, allowing real-time detection of splice variants and RNA modifications. A novel method called SHERRY utilizes Tn5 transposase to construct RNA-seq libraries without second-strand synthesis, offering simplicity, scalability, and improved reproducibility compared to traditional methods. Standardized methodological information is crucial for reproducibility and accuracy in RNA-seq studies, emphasizing the need for explicit pipeline details in research publications.
What is the molecular mechanism behind the connection between jasmonic acid and RG4s in response to heat stress?
5 answers
The molecular mechanism linking jasmonic acid (JA) and RG4s (RNA G-quadruplexes) in response to heat stress involves the activation of JA signaling pathways and the regulation of gene expression. Under combined high light and heat stress conditions, plants exhibit increased accumulation of JA and JA-Ile, along with unique transcriptional responses, including many JA-associated genes. JA is crucial for regulating several transcriptional responses specific to the stress combination, highlighting its importance in plant acclimation to HL+HS stress. Additionally, JA plays a role in the crosstalk between different phytohormones, such as auxin, gibberellic acid, salicylic acid, brassinosteroid, ethylene, and abscisic acid, to balance plant growth and defense responses. This intricate network of JA signaling and its interactions with other hormones contribute to the plant's ability to cope with heat stress through the modulation of gene expression and stress responses.
What are the major steps using yeast two-hybrid screening for protein-protein interactions?
5 answers
Yeast two-hybrid (Y2H) screening for protein-protein interactions involves several key steps. Firstly, the technique relies on split transcription factors being brought into proximity by interacting proteins, activating reporter genes. Secondly, the method allows for the identification of novel interactions between proteins, aiding in understanding disease pathogenesis and therapeutic strategies. Additionally, Y2H screening can be implemented in array-based screenings to probe entire protein domains, such as the human PDZome, for interactions with candidate proteins. Furthermore, quantifying the binding affinity of these interactions is crucial for elucidating biochemical signaling pathways and characterizing binding proteins. Overall, Y2H screening offers a powerful, accessible, and versatile approach for detecting direct protein-protein interactions and exploring their functional implications in various biological processes.
What is the most abundantly expressed protein in bunyamwera viruses?
5 answers
The most abundantly expressed protein in Bunyamwera viruses is the L protein. The L protein of Bunyamwera virus is a high molecular weight protein responsible for catalyzing transcription and replication of the viral genome. It is presumed to be the virion-associated RNA polymerase and is multifunctional, likely involved in various aspects of RNA synthesis. Studies have focused on expressing the L protein using different systems, such as vaccinia virus expression systems, to understand its functional domains and role in virus replication. Additionally, the L protein has been shown to be functional in replicating viral RNA in nucleocapsid transfection assays. Overall, the L protein stands out as the most abundantly expressed and functionally crucial protein in Bunyamwera viruses.
Types of phenolics?
5 answers
Phenolics, also known as phenolic compounds, are a diverse group of secondary metabolites found in plants. This group includes various subtypes such as flavonoids, phenolic acids, tannins, lignans, and coumarins. These compounds are naturally present in a wide range of plant-based foods like fruits, vegetables, cereals, roots, and leaves. Phenolic compounds exhibit potent biological activities, including antioxidant, anti-inflammatory, antimicrobial, and anti-cancer properties. They play crucial roles in plant defense mechanisms against abiotic and biotic stresses, acting as signaling molecules and protective agents. The consumption of phenolic-rich foods is associated with potential health benefits, particularly in preventing chronic diseases like atherosclerosis, hypertension, cancer, diabetes, and obesity.