A
Alex Lomsadze
Researcher at Georgia Institute of Technology
Publications - 5
Citations - 443
Alex Lomsadze is an academic researcher from Georgia Institute of Technology. The author has contributed to research in topics: Gene prediction & Gene Annotation. The author has an hindex of 5, co-authored 5 publications receiving 367 citations.
Papers
More filters
Journal ArticleDOI
Eukaryotic Gene Prediction Using GeneMark.hmm-E and GeneMark-ES
Mark Borodovsky,Alex Lomsadze +1 more
TL;DR: This unit describes how to use the gene‐finding programs GeneMark.hmm‐E and GeneMark‐ES for finding protein‐coding genes in the genomic DNA of eukaryotic organisms.
Journal ArticleDOI
Prokaryotic gene prediction using GeneMark and GeneMark.hmm.
TL;DR: In this unit, the GeneMark and GeneMark.hmm programs are presented as two different methods for the in silico prediction of genes in prokaryotes.
Reference EntryDOI
Gene Identification in Prokaryotic Genomes, Phages, Metagenomes, and EST Sequences with GeneMarkS Suite
Mark Borodovsky,Alex Lomsadze +1 more
TL;DR: This unit describes how to use several gene-finding programs from the GeneMark line developed for finding protein-coding ORFs in genomic DNA of prokaryotic species, in genomicDNA of eukaryoticspecies with intronless genes, in genomes of viruses and phages, and in proKaryotic metagenomic sequences, as well as in EST sequences with spliced-out introns.
Journal ArticleDOI
Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite.
Mark Borodovsky,Alex Lomsadze +1 more
TL;DR: This unit describes how to use several gene‐finding programs from the GeneMark line developed for finding protein‐coding ORFs in genomic DNA of prokaryotic species, in genomicDNA of eukaryotic Species with intronless genes, in genomes of viruses and phages, and in proKaryotic metagenomic sequences, as well as in EST sequences with spliced‐out introns.
Journal ArticleDOI
Eukaryotic gene prediction using GeneMark.hmm.
TL;DR: The eukaryotic GeneMark.hmm uses Markov models of protein coding and noncoding sequences, as well as positional nucleotide frequency matrices for prediction of the translational start, translational termination and splice sites, and is integrated into one Hidden Markov model.