Probability Distributions.- Linear Models for Regression.- Linear Models for Classification.- Neural Networks.- Kernel Methods.- Sparse Kernel Machines.- Graphical Models.- Mixture Models and EM.- Approximate Inference.- Sampling Methods.- Continuous Latent Variables.- Sequential Data.- Combining Models.

Pattern Recognition and Machine Learning

+ Abstract: Statistical parametric maps are spatially extended statistical processes that are used to test hypotheses about regionally specific effects in neuroimaging data. The most established sorts of statistical parametric maps (e.g., Friston et al. (1991): J Cereb Blood Flow Metab 11:690-699; Worsley et al. 119921: J Cereb Blood Flow Metab 12:YOO-918) are based on linear models, for example ANCOVA, correlation coefficients and t tests. In the sense that these examples are all special cases of the general linear model it should be possible to implement them (and many others) within a unified framework. We present here a general approach that accommodates most forms of experimental layout and ensuing analysis (designed experiments with fixed effects for factors, covariates and interaction of factors). This approach brings together two well established bodies of theory (the general linear model and the theory of Gaussian fields) to provide a complete and simple framework for the analysis of imaging data. The importance of this framework is twofold: (i) Conceptual and mathematical simplicity, in that the same small number of operational equations is used irrespective of the complexity of the experiment or nature of the statistical model and (ii) the generality of the framework provides for great latitude in experimental design and analysis.

/pdf/statistical-parametric-maps-in-functional-imaging-a-general-3e3ee6im7g.pdf

Statistical parametric maps in functional imaging: A general linear approach

Remarkable progress has been made in image recognition, primarily due to the availability of large-scale annotated datasets and deep convolutional neural networks (CNNs). CNNs enable learning data-driven, highly representative, hierarchical image features from sufficient training data. However, obtaining datasets as comprehensively annotated as ImageNet in the medical imaging domain remains a challenge. There are currently three major techniques that successfully employ CNNs to medical image classification: training the CNN from scratch, using off-the-shelf pre-trained CNN features, and conducting unsupervised CNN pre-training with supervised fine-tuning. Another effective method is transfer learning, i.e., fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. In this paper, we exploit three important, but previously understudied factors of employing deep convolutional neural networks to computer-aided detection problems. We first explore and evaluate different CNN architectures. The studied models contain 5 thousand to 160 million parameters, and vary in numbers of layers. We then evaluate the influence of dataset scale and spatial image context on performance. Finally, we examine when and why transfer learning from pre-trained ImageNet (via fine-tuning) can be useful. We study two specific computer-aided detection (CADe) problems, namely thoraco-abdominal lymph node (LN) detection and interstitial lung disease (ILD) classification. We achieve the state-of-the-art performance on the mediastinal LN detection, and report the first five-fold cross-validation classification results on predicting axial CT slices with ILD categories. Our extensive empirical evaluation, CNN model analysis and valuable insights can be extended to the design of high performance CAD systems for other medical imaging tasks.

Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning

General Strategies.- Regression Models.- Classification Models.- Other Considerations.- Appendix.- References.- Indices.

Applied Predictive Modeling

We have witnessed great interest and a wealth of promise in content-based image retrieval as an emerging technology. While the last decade laid foundation to such promise, it also paved the way for a large number of new techniques and systems, got many new people involved, and triggered stronger association of weakly related fields. In this article, we survey almost 300 key theoretical and empirical contributions in the current decade related to image retrieval and automatic image annotation, and in the process discuss the spawning of related subfields. We also discuss significant challenges involved in the adaptation of existing image retrieval techniques to build systems that can be useful in the real world. In retrospect of what has been achieved so far, we also conjecture what the future may hold for image retrieval research.

/pdf/image-retrieval-ideas-influences-and-trends-of-the-new-age-51whw4w7su.pdf

Image retrieval: Ideas, influences, and trends of the new age

A review of content-based image retrieval systems in medical applications—clinical benefits and future directions

https://sci2s.ugr.es/keel/pdf/algorithm/articulo/2006-Cohen-AIM.pdf

Learning from imbalanced data in surveillance of nosocomial infection

Building a reference multimedia database for interstitial lung diseases

A fully 3-D reconstruction algorithm has been developed to reconstruct data from a 16 ring PET camera (a Siemens/CTI 953B) with automatically retractable septa. The tomograph is able to acquire coincidences between any pair of detector rings and septa retraction increases the total system count rate by a factor of 7.8 (including scatter) and 4.7 (scatter subtracted) for a uniform, 20 cm diameter cylinder. The reconstruction algorithm is based on 3-D filtered backprojection, expressed in a form suitable for the multi-angle sinogram data. Sinograms which are not measured due to the truncated cylindrical geometry of the tomograph, but which are required for a spatially invariant response function, are obtained by forward projection. After filtering, the complete set of sinograms is backprojected into a 3-D volume of 128*128*31 voxels using a voxel-driven procedure. The algorithm has been validated with simulation, and tested with both phantom and clinical data from the 953B. >

Fully three-dimensional reconstruction for a PET camera with retractable septa

Erratum to “A review of content-based image retrieval systems in medical applications—Clinical benefits and future directions” [Int. J. Med. Inform. 73 (1) (2004) 1–23]

Antoine Geissbuhler

Papers

A review of content-based image retrieval systems in medical applications—clinical benefits and future directions

Learning from imbalanced data in surveillance of nosocomial infection

Building a reference multimedia database for interstitial lung diseases

Fully three-dimensional reconstruction for a PET camera with retractable septa

Erratum to “A review of content-based image retrieval systems in medical applications—Clinical benefits and future directions” [Int. J. Med. Inform. 73 (1) (2004) 1–23]