Ara Cho

TL;DR: A database of literature-curated human TF-target interactions, TRRUST (transcriptional regulatory relationships unravelled by sentence-based text-mining, http://www.grnpedia.org/trrust), which currently contains 8,015 interactions between 748 TF genes and 1,975 non-TF genes is presented.

TL;DR: A method for prioritizing cancer genes accounting not only for mutations in individual genes but also in their neighbors in functional networks, MUFFINN (MUtations For Functional Impact on Network Neighbors), which shows high sensitivity compared with gene-centric analyses of mutation data.

TL;DR: WormNet version 3 (v3), which is a new network-assisted hypothesis-generating server for C. elegans, includes major updates to the base gene network, which substantially improved predictions of RNAi phenotypes.

TL;DR: It is demonstrated that the usefulness of a genome-scale functional network to investigate pathogenic systems in P. aeruginosa can be demonstrated, and PseudomonasNet-assisted predictions can effectively identify novel genes involved in virulence and antibiotic resistance.

TL;DR: A network prioritization server dedicated to Drosophila that covers ∼95% of the coding genome and is expected to serve as a versatile hypothesis-generation platform for genes and functions in the study of basic animal genetics, developmental biology and human disease.