We propose a deep convolutional neural network architecture codenamed Inception that achieves the new state of the art for classification and detection in the ImageNet Large-Scale Visual Recognition Challenge 2014 (ILSVRC14). The main hallmark of this architecture is the improved utilization of the computing resources inside the network. By a carefully crafted design, we increased the depth and width of the network while keeping the computational budget constant. To optimize quality, the architectural decisions were based on the Hebbian principle and the intuition of multi-scale processing. One particular incarnation used in our submission for ILSVRC14 is called GoogLeNet, a 22 layers deep network, the quality of which is assessed in the context of classification and detection.

/pdf/going-deeper-with-convolutions-1yobw2o2ds.pdf

Going deeper with convolutions

Machine Learning is the study of methods for programming computers to learn. Computers are applied to a wide range of tasks, and for most of these it is relatively easy for programmers to design and implement the necessary software. However, there are many tasks for which this is difficult or impossible. These can be divided into four general categories. First, there are problems for which there exist no human experts. For example, in modern automated manufacturing facilities, there is a need to predict machine failures before they occur by analyzing sensor readings. Because the machines are new, there are no human experts who can be interviewed by a programmer to provide the knowledge necessary to build a computer system. A machine learning system can study recorded data and subsequent machine failures and learn prediction rules. Second, there are problems where human experts exist, but where they are unable to explain their expertise. This is the case in many perceptual tasks, such as speech recognition, hand-writing recognition, and natural language understanding. Virtually all humans exhibit expert-level abilities on these tasks, but none of them can describe the detailed steps that they follow as they perform them. Fortunately, humans can provide machines with examples of the inputs and correct outputs for these tasks, so machine learning algorithms can learn to map the inputs to the outputs. Third, there are problems where phenomena are changing rapidly. In finance, for example, people would like to predict the future behavior of the stock market, of consumer purchases, or of exchange rates. These behaviors change frequently, so that even if a programmer could construct a good predictive computer program, it would need to be rewritten frequently. A learning program can relieve the programmer of this burden by constantly modifying and tuning a set of learned prediction rules. Fourth, there are applications that need to be customized for each computer user separately. Consider, for example, a program to filter unwanted electronic mail messages. Different users will need different filters. It is unreasonable to expect each user to program his or her own rules, and it is infeasible to provide every user with a software engineer to keep the rules up-to-date. A machine learning system can learn which mail messages the user rejects and maintain the filtering rules automatically. Machine learning addresses many of the same research questions as the fields of statistics, data mining, and psychology, but with differences of emphasis. Statistics focuses on understanding the phenomena that have generated the data, often with the goal of testing different hypotheses about those phenomena. Data mining seeks to find patterns in the data that are understandable by people. Psychological studies of human learning aspire to understand the mechanisms underlying the various learning behaviors exhibited by people (concept learning, skill acquisition, strategy change, etc.).

Machine learning

BIOE 402. Medical Technology Assessment. 2 or 3 hours. Bioentrepreneur course. Assessment of medical technology in the context of commercialization. Objectives, competition, market share, funding, pricing, manufacturing, growth, and intellectual property; many issues unique to biomedical products. Course Information: 2 undergraduate hours. 3 graduate hours. Prerequisite(s): Junior standing or above and consent of the instructor.

“Bioinformatics” 특집을 내면서

Introduction to linear and nonlinear programming

MapReduce is emerging as an important programming model for large-scale data-parallel applications such as web indexing, data mining, and scientific simulation. Hadoop is an open-source implementation of MapReduce enjoying wide adoption and is often used for short jobs where low response time is critical. Hadoop's performance is closely tied to its task scheduler, which implicitly assumes that cluster nodes are homogeneous and tasks make progress linearly, and uses these assumptions to decide when to speculatively re-execute tasks that appear to be stragglers. In practice, the homogeneity assumptions do not always hold. An especially compelling setting where this occurs is a virtualized data center, such as Amazon's Elastic Compute Cloud (EC2). We show that Hadoop's scheduler can cause severe performance degradation in heterogeneous environments. We design a new scheduling algorithm, Longest Approximate Time to End (LATE), that is highly robust to heterogeneity. LATE can improve Hadoop response times by a factor of 2 in clusters of 200 virtual machines on EC2.

/pdf/improving-mapreduce-performance-in-heterogeneous-49jm9yzum1.pdf

Improving MapReduce performance in heterogeneous environments

In this work, we show that the standard graph-partitioning-based decomposition of sparse matrices does not reflect the actual communication volume requirement for parallel matrix-vector multiplication. We propose two computational hypergraph models which avoid this crucial deficiency of the graph model. The proposed models reduce the decomposition problem to the well-known hypergraph partitioning problem. The recently proposed successful multilevel framework is exploited to develop a multilevel hypergraph partitioning tool PaToH for the experimental verification of our proposed hypergraph models. Experimental results on a wide range of realistic sparse test matrices confirm the validity of the proposed hypergraph models. In the decomposition of the test matrices, the hypergraph models using PaToH and hMeTiS result in up to 63 percent less communication volume (30 to 38 percent less on the average) than the graph model using MeTiS, while PaToH is only 1.3-2.3 times slower than MeTiS on the average.

/pdf/hypergraph-partitioning-based-decomposition-for-parallel-3q4e7ffhes.pdf

Hypergraph-partitioning-based decomposition for parallel sparse-matrix vector multiplication

We investigate the problem of permuting a sparse rectangular matrix into block-diagonal form. Block-diagonal form of a matrix grants an inherent parallelism for solving the deriving problem, as recently investigated in the context of mathematical programming, LU factorization, and QR factorization. To represent the nonzero structure of a matrix, we propose bipartite graph and hypergraph models that reduce the permutation problem to those of graph partitioning by vertex separator and hypergraph partitioning, respectively. Our experiments on a wide range of matrices, using the state-of-the-art graph and hypergraph partitioning tools MeTiS and PaToH\@, revealed that the proposed methods yield very effective solutions both in terms of solution quality and runtime.

/pdf/permuting-sparse-rectangular-matrices-into-block-diagonal-2esizc5stn.pdf

Permuting Sparse Rectangular Matrices into Block-Diagonal Form

http://www.cs.bilkent.edu.tr/~aykanat/papers/06JPDC.pdf

Task assignment in heterogeneous computing systems

/pdf/patoh-partitioning-tool-for-hypergraphs-ne7nj615f2.pdf

PaToH (Partitioning tool for hypergraphs)

We consider two-dimensional partitioning of general sparse matrices for parallel sparse matrix-vector multiply operation. We present three hypergraph-partitioning-based methods, each having unique advantages. The first one treats the nonzeros of the matrix individually and hence produces fine-grain partitions. The other two produce coarser partitions, where one of them imposes a limit on the number of messages sent and received by a single processor, and the other trades that limit for a lower communication volume. We also present a thorough experimental evaluation of the proposed two-dimensional partitioning methods together with the hypergraph-based one-dimensional partitioning methods, using an extensive set of public domain matrices. Furthermore, for the users of these partitioning methods, we present a partitioning recipe that chooses one of the partitioning methods according to some matrix characteristics.

/pdf/on-two-dimensional-sparse-matrix-partitioning-models-methods-2lsnrhbvha.pdf

Cevdet Aykanat

Papers

Hypergraph-partitioning-based decomposition for parallel sparse-matrix vector multiplication

Permuting Sparse Rectangular Matrices into Block-Diagonal Form

Task assignment in heterogeneous computing systems

PaToH (Partitioning tool for hypergraphs)

On Two-Dimensional Sparse Matrix Partitioning: Models, Methods, and a Recipe