This book explains the relationship of electrophysiology, nonlinear dynamics, and the computational properties of neurons, with each concept presented in terms of both neuroscience and mathematics and illustrated using geometrical intuition In order to model neuronal behavior or to interpret the results of modeling studies, neuroscientists must call upon methods of nonlinear dynamics This book offers an introduction to nonlinear dynamical systems theory for researchers and graduate students in neuroscience It also provides an overview of neuroscience for mathematicians who want to learn the basic facts of electrophysiology "Dynamical Systems in Neuroscience" presents a systematic study of the relationship of electrophysiology, nonlinear dynamics, and computational properties of neurons It emphasizes that information processing in the brain depends not only on the electrophysiological properties of neurons but also on their dynamical properties The book introduces dynamical systems starting with one- and two-dimensional Hodgkin-Huxley-type models and continuing to a description of bursting systems Each chapter proceeds from the simple to the complex, and provides sample problems at the end The book explains all necessary mathematical concepts using geometrical intuition; it includes many figures and few equations, making it especially suitable for non-mathematicians Each concept is presented in terms of both neuroscience and mathematics, providing a link between the two disciplines Nonlinear dynamical systems theory is at the core of computational neuroscience research, but it is not a standard part of the graduate neuroscience curriculum - or taught by math or physics department in a way that is suitable for students of biology This book offers neuroscience students and researchers a comprehensive account of concepts and methods increasingly used in computational neuroscience

/pdf/dynamical-systems-in-neuroscience-51dkewn57v.pdf

Dynamical Systems in Neuroscience

1980 Preface * 1999 Preface * 1999 Acknowledgements * Introduction * 1 Circular Logic * 2 Phase Singularities (Screwy Results of Circular Logic) * 3 The Rules of the Ring * 4 Ring Populations * 5 Getting Off the Ring * 6 Attracting Cycles and Isochrons * 7 Measuring the Trajectories of a Circadian Clock * 8 Populations of Attractor Cycle Oscillators * 9 Excitable Kinetics and Excitable Media * 10 The Varieties of Phaseless Experience: In Which the Geometrical Orderliness of Rhythmic Organization Breaks Down in Diverse Ways * 11 The Firefly Machine 12 Energy Metabolism in Cells * 13 The Malonic Acid Reagent ('Sodium Geometrate') * 14 Electrical Rhythmicity and Excitability in Cell Membranes * 15 The Aggregation of Slime Mold Amoebae * 16 Numerical Organizing Centers * 17 Electrical Singular Filaments in the Heart Wall * 18 Pattern Formation in the Fungi * 19 Circadian Rhythms in General * 20 The Circadian Clocks of Insect Eclosion * 21 The Flower of Kalanchoe * 22 The Cell Mitotic Cycle * 23 The Female Cycle * References * Index of Names * Index of Subjects

https://www.cambridge.org/core/services/aop-cambridge-core/content/view/596B270197FE27DE5FABB598B6210622/S0025557200150892a.pdf/div-class-title-span-class-italic-the-geometry-of-biological-time-span-by-a-t-winfree-pp-544-dm68-corrected-second-printing-1990-isbn-3-540-52528-9-springer-div.pdf

The geometry of biological time , by A. T. Winfree. Pp 544. DM68. Corrected Second Printing 1990. ISBN 3-540-52528-9 (Springer)

Synchronization phenomena in large populations of interacting elements are the subject of intense research efforts in physical, biological, chemical, and social systems. A successful approach to the problem of synchronization consists of modeling each member of the population as a phase oscillator. In this review, synchronization is analyzed in one of the most representative models of coupled phase oscillators, the Kuramoto model. A rigorous mathematical treatment, specific numerical methods, and many variations and extensions of the original model that have appeared in the last few years are presented. Relevant applications of the model in different contexts are also included.

/pdf/the-kuramoto-model-a-simple-paradigm-for-synchronization-2akwf0t24m.pdf

The Kuramoto model: A simple paradigm for synchronization phenomena

Neurons in the brain communicate by short electrical pulses, the so-called action potentials or spikes. How can we understand the process of spike generation? How can we understand information transmission by neurons? What happens if thousands of neurons are coupled together in a seemingly random network? How does the network connectivity determine the activity patterns? And, vice versa, how does the spike activity influence the connectivity pattern? These questions are addressed in this 2002 introduction to spiking neurons aimed at those taking courses in computational neuroscience, theoretical biology, biophysics, or neural networks. The approach will suit students of physics, mathematics, or computer science; it will also be useful for biologists who are interested in mathematical modelling. The text is enhanced by many worked examples and illustrations. There are no mathematical prerequisites beyond what the audience would meet as undergraduates: more advanced techniques are introduced in an elementary, concrete fashion when needed.

/pdf/spiking-neuron-models-single-neurons-populations-plasticity-58gzrd6ih6.pdf

Spiking Neuron Models: Single Neurons, Populations, Plasticity

Brownian motors: noisy transport far from equilibrium

Synchronization properties of fully connectec. netwoi,s of identical oscillatory neurons are studied, assuming purely excitatory interactions. We analyze their dependence on the time course of the synaptic interaction and on the response of the neurons to small depolarizations. Two types of responses are distinguished. In the first type, neurons always respond to small depolarization by advancing the next spike. In the second type, an excitatory postsynaptic potential (EPSP) received after the refractory period delays the firing of the next spike, while an EPSP received at a later time advances the firing. For these two types of responses we derive general conditions under which excitation destabilizes in-phase synchrony. We show that excitation is generally desynchronizing for neurons with a response of type I but can be synchronizing for responses of type I1 when the synaptic interactions are fast. These results are illustrated on three models of neurons: the Lapicque integrate-and-fire model, the model of Connor et al., and the Hodgkin-Huxley model. The latter exhibits a type I1 response, at variance with the first two models, that have type I responses. We then examine the consequences of these results for large networks, focusing on the states of partial coherence that emerge. Finally, we study the Lapicque model and the model of Connor et al. at large coupling and show that excitation can be desynchronizing even beyond the weak coupling regime.

Synchrony in excitatory neural networks

Multiphase Averaging for Classical Systems

Hodgkin-Huxley model neurons coupled by weak excitatory interactions are studied by a phase reduction technique. All the information about the coupling between the neurons and their synchronization is then contained in an effective interaction between their phases. One shows analytically that an excitatory coupling can result in an effective inhibition between the neurons reducing their firing rates. Systems of two neurons exhibit bistability and out-of-phase locking. It is suggested that these features may have significant consequences for networks.

https://iopscience.iop.org/article/10.1209/0295-5075/23/5/011/pdf

Phase Dynamics for Weakly Coupled Hodgkin-Huxley Neurons

We consider a network of globally coupled phase oscillators. The interaction between any two of them is derived from a simple model of weakly coupled biological neurons and is a periodic function of the phase difference with two Fourier components. The collective dynamics of this network is studied with emphasis on the existence and the stability of clustering states. Depending on a control parameter, three typical types of dynamics can be observed at large time: a fully synchronized state of the network (one-cluster state), a totally incoherent state, and a pair of two-cluster states connected by heteroclinic orbits. This last regime is particularly sensitive to noise. Indeed, adding a small noise gives rise, in large networks, to a slow periodic oscillation between the two two-cluster states. The frequency of this oscillation is proportional to the logarithm of the noise intensity. These switching states should occur frequently in networks of globally coupled oscillators.

Clustering and slow switching in globally coupled phase oscillators

It is shown that very small time steps are required to reproduce correctly the synchronization properties of large networks of integrate-and-fire neurons when the differential system describing their dynamics is integrated with the standard Euler or second-order Runge-Kutta algorithms. The reason for that behavior is analyzed, and a simple improvement of these algorithms is proposed.

Claude Meunier

Papers

Synchrony in excitatory neural networks

Multiphase Averaging for Classical Systems

Phase Dynamics for Weakly Coupled Hodgkin-Huxley Neurons

Clustering and slow switching in globally coupled phase oscillators

On numerical simulations of integrate-and-fire neural networks