http://www.scielo.br/pdf/bjm/v49n1/1517-8382-bjm-49-01-0067.pdf

Contribution of dark septate fungi to the nutrient uptake and growth of rice plants.

Many studies have been now focused on the promising approach of fungal endophytes to protect the plant from nutrient deficiency and environmental stresses along with better development and productivity. Quantitative and qualitative protein characteristics are regulated at genomic, transcriptomic, and posttranscriptional levels. Here, we used integrated in-depth proteome analyses to characterize the relationship between endophyte Piriformospora indica and Brassica napus plant highlighting its potential involvement in symbiosis and overall growth and development of the plant. An LC-MS/MS based label-free quantitative technique was used to evaluate the differential proteomics under P. indica treatment vs. control plants. In this study, 8,123 proteins were assessed, of which 46 showed significant abundance (34 downregulated and 12 upregulated) under high confidence conditions (p-value ≤ 0.05, fold change ≥2, confidence level 95%). Mapping of identified differentially expressed proteins with bioinformatics tools such as GO and KEGG pathway analysis showed significant enrichment of gene sets involves in metabolic processes, symbiotic signaling, stress/defense responses, energy production, nutrient acquisition, biosynthesis of essential metabolites. These proteins are responsible for root’s architectural modification, cell remodeling, and cellular homeostasis during the symbiotic growth phase of plant’s life. We tried to enhance our knowledge that how the biological pathways modulate during symbiosis?

Proteomic approach to understand the molecular physiology of symbiotic interaction between Piriformospora indica and Brassica napus.

An endophytic strain of Methylobacterium sp. increases arsenate tolerance in Acacia farnesiana (L.) Willd: A proteomic approach.

Salvia miltiorrhiza is a medicinal plant highly appreciated by its content of tanshinones and salvianolic acids. Tanshinones are of particular relevance for their anti-oxidant, anti-tumoral and anti-inflammatory properties. Abiotic and biotic agents as silver nitrate and yeast extract have shown efficiently to stimulate tanshinone accumulation, but the underlying molecular mechanism remains essentially unknown. By using hairy roots as experimental material and the elicitors mentioned, were obtained up to 22 mg of tanshinones per gram of dry weight. Differential label-free quantitative proteomic analysis was applied to study the proteins involved in tanshinone biosynthesis. A total of 2650 proteins were identified in roots extracts, of which 893 showed statistically (p < 0.05) significant change in relative abundance compared to control roots, 251 proteins were upregulated and 642 downregulated. Among the upregulated proteins the predominant functional categories were metabolism (47%), stress defense (18%) and redox homeostasis (10%). Within the metabolism category, isoprenoid metabolism enzymes, cytochromes P450 and FAD-binding berberine proteins showed abundance profile linked to tanshinone concentration. The results presented here allowed to propose 5 new cytochromes P450 and 5 berberine enzymes as candidates to be involved into tanshinone biosynthesis, a novel finding that opens new avenues to improve tanshinone production through biotechnological approaches.

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Proteomic analysis reveals novel insights into tanshinones biosynthesis in Salvia miltiorrhiza hairy roots.

iTRAQ-based comparative proteomic analysis reveals high temperature accelerated leaf senescence of tobacco (Nicotiana tabacum L.) during flue-curing.

Arbuscular mycorrhiza fungi (AMF) can colonize the roots of Amorpha fruticosa, a perennial leguminous woody shrub and form arbuscular mycorrhiza (AM). AMF have significant promoting effects on A. fruticosa growth as the intensity of fungal colonization increases. Taking AMF-A. fruticosa symbionts as the experimental material, gel-free isobaric tags for relative and absolute quantification (iTRAQ) coupled with two-dimensional liquid chromatography-tandem mass spectrometry (LC-MS/MS) were used to investigate the expression of A. fruticosa mycorrhizal proteins at the maturation stage. A total of 3,473 proteins were identified, of which 77 showed dramatic changes in their root expression levels; 33 increased and 44 decreased. We also found nine AMF proteins that were expressed with AMF treatment. The 77 proteins were classified according to function. Plant proteins were assigned into 11 categories: metabolism-related (32%), protein folding and degradation-related (22%), energy-related (10%), protein synthesis-related (8%), stress and defense-related (24%), transcription-related (6%), membrane and transport-related (4%), cellular structure-related (2.5%), signaling transduction-related (11%) and unknown proteins (5%). The results of the study provide a foundation for further investigation of the metabolic characteristics and molecular mechanisms of AM.

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Proteomic analysis of symbiotic proteins of Glomus mosseae and Amorpha fruticosa.

Through inoculating Amorpha fruiticosa with arbuscular mycorrhizal (AM) fungi and without, the dynamic characteristics of plant endogenous hormone levels, soluble sugar contents in roots and in leaves respectively were systemic studied. The results showed that AM fungi could obviously influenced soluble sugar contents and endogenous hormone levels in host plants with colonization percentage changing. Two kinds of AM fungi, Glomus mosseae and Glomus intraradices, were chose as tested strains to infect A. fruiticosa roots for forming the mycorrhizal complex using pot-experiment methods, and G. mosseae had a better colonization effect than G. intraradices on A. fruiticosa roots. After 70 days growth of A. fruiticosa seedings in the greenhouse, the colonization percentage of G. mosseae on hosts reached 88.5% that of the highest. The soluble sugar contents in roots and leaves of seedlings inoculated with AM fungi were significantly higher than control treatments, and had positive correlation with colonization percentage. AM fungi dramatically increased the contents of auxin (IAA), gibberellin (GA) and zeatin (ZR) in roots, but had litter impact on abscisic acid (ABA).

Influence Arbuscular Mycorrhizal Fungi Have over Soluble Sugar Contents and Endogenous Hormone Levels of Amorpha fruticosa

Introduction Soil salinization has become one of the most serious environmental issues globally. Excessive accumulation of soluble salts will adversely affect the survival, growth, and reproduction of plants. Elaeagnus angustifolia L., commonly known as oleaster or Russian olive, has the characteristics of tolerance to drought and salt. Arbuscular mycorrhizal (AM) fungi are considered to be bio-ameliorator of saline soils that can enhance the salt tolerance of the host plants. However, there is little information on the root proteomics of AM plants under salt stress. Methods In this study, a label-free quantitative proteomics method was employed to identify the differentially abundant proteins in AM E. angustifolia seedlings under salt stress. Results The results showed that a total of 170 proteins were significantly differentially regulated in E.angustifolia seedlings after AMF inoculation under salt stress. Mycorrhizal symbiosis helps the host plant E. angustifolia to respond positively to salt stress and enhances its salt tolerance by regulating the activities of some key proteins related to amino acid metabolism, lipid metabolism, and glutathione metabolism in root tissues. Conclusion Aspartate aminotransferase, dehydratase-enolase-phosphatase 1 (DEP1), phospholipases D, diacylglycerol kinase, glycerol-3-phosphate O-acyltransferases, and gamma-glutamyl transpeptidases may play important roles in mitigating the detrimental effect of salt stress on mycorrhizal E. angustifolia . In conclusion, these findings provide new insights into the salt-stress tolerance mechanisms of AM E. angustifolia seedlings and also clarify the role of AM fungi in the molecular regulation network of E. angustifolia under salt stress.

Label-free quantitative proteomics of arbuscular mycorrhizal Elaeagnus angustifolia seedlings provides insights into salt-stress tolerance mechanisms

Soil microorganisms play a crucial role in the biogeochemical cycling of terrestrial ecosystems. However, previous studies on the effects of nitrogen deposition on microorganisms have primarily focused on nitrogen-sensitive tropical forest ecosystems. This study focused on soil in a temperate Korean pine plantation and conducted a field simulated nitrogen deposition experiment. The effects of different nitrogen application rates on the microbial community structure were analyzed using the phospholipid fatty acid (PLFA) method. The experiment included four nitrogen application rates: control (CK: 0 kg N ha−1 yr−1), low nitrogen treatment (LN: 20 kg N ha−1 yr−1), medium nitrogen treatment (MN: 40 kg N ha−1 yr−1), and high nitrogen treatment (HN: 80 kg N ha−1 yr−1). After seven years of continuous application of ammonium nitrate solution, the soil microbial community structure was determined using the PLFA method. The results showed that all nitrogen application rates significantly reduced the PLFA concentration of fungi and AM fungi (P < 0.05), while bacterial biomass significantly decreased in the high nitrogen treatment group. The biomass of Gram-positive bacteria, Gram-negative bacteria (G-), and actinomycetes also significantly decreased in the HN treatment group. Furthermore, long-term application of high nitrogen concentration (80 kg N ha−1 yr−1) significantly reduced soil microbial biomass and changed the fungal to bacterial ratio, thus affecting the soil microbial community structure. Redundancy analysis (RDA) of soil microbial and soil chemical properties found that the long-term simulated nitrogen deposition experiment affected the soil microbial community structure by changing the content of soil N, P elements, and soil pH values. In summary, long-term simulated N deposition can negatively affect soil microbial biomass and its community structure, and the main reason for this analysis is related to long-term N application leading to soil acidification and changes in the conversion of soil N and P elements.

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Effects of Simulated Nitrogen Deposition on Soil Microbial Community Structure in Temperate Forest Based on PLFA Method

Grain sorghum has been a significant contributor to global food security since the prehistoric period and may contribute even more to the security of both food and energy in the future. Globally, precise management techniques are crucial for increasing grain sorghum productivity. In China, with diverse ecological types, variety introduction occasionally occurs across ecological zones. However, few information is available on the effect of ecological type on genotype performance and how plant spacing configuration influences grain yield in various ecological zones. Hence, a series of two-year field experiments were conducted in 2020 and 2021 in four ecological zones of China, from the northeast to the southwest. The experiments included six widely adapted sorghum varieties under six plant spacing configurations (two row spacing modes: equidistant row spacing (60 cm) mode and wide (80 cm)-narrow (40 cm) row spacing mode; three in-row plant spacings: 10 cm, 15 cm, and 20 cm). Our results indicated that ecological type, variety, and plant spacing configuration had a significant effect on sorghum yield. Ecological type contributed the highest proportion to the yield variance (49.8%), followed by variety (8.3%), while plant spacing configuration contributed 1.8%. Sorghum growth duration was highly influenced by the ecological type, accounting for 87.2% of its total variance, whereas plant height was mainly affected by genotype, which contributed 81.6% of the total variance. All test varieties, developed in the south or north, can reach maturity within 94-108 d, just before fall sowing in central China. Generally, sorghum growth duration becomes longer when a variety is introduced from south to north. A late-maturing variety, developed in the spring sowing and late-maturing regions, possibly could not reach maturity in the early-maturing region. The row spacing modes had no significant affect on sorghum yield, but the equal-row spacing mode consistently caused higher yields with only one exception; this might imply that equal-row spacing mode was more advantageous for boosting sorghum yield potential. In contrast, decreasing in-row plant spacing showed significant positive linear associations with sorghum grain yield in most cases. In addition, these results demonstrated that sorghum is a widely adapted crop and enables success in variety introduction across ecological zones.

Dan-Dan Qi

Papers

Proteomic analysis of symbiotic proteins of Glomus mosseae and Amorpha fruticosa.

Influence Arbuscular Mycorrhizal Fungi Have over Soluble Sugar Contents and Endogenous Hormone Levels of Amorpha fruticosa

Label-free quantitative proteomics of arbuscular mycorrhizal Elaeagnus angustifolia seedlings provides insights into salt-stress tolerance mechanisms

Effects of Simulated Nitrogen Deposition on Soil Microbial Community Structure in Temperate Forest Based on PLFA Method

Interaction of genotype-ecological type-plant spacing configuration in sorghum [Sorghum bicolor (L.) Moench] in China