Showing papers by "David E. Manolopoulos published in 2005"

Chemical reaction rates from ring polymer molecular dynamics.

Abstract: We show how the ring-polymer molecular dynamics method can be adapted to calculate approximate Kubo-transformed flux-side correlation functions, and hence rate coefficients for condensed phase reactions. An application of the method to the standard model for a chemical reaction in solution—a quartic double-well potential linearly coupled to a bath of harmonic oscillators—is found to give results of comparable accuracy to those of the classical Wigner model and the centroid molecular dynamics method. However, since the present method does not require that one evaluate the Wigner transform of a thermal flux operator or that one perform a separate path integral calculation for each molecular dynamics time step, we believe it will prove easier to apply to more general problems than either of these alternative techniques. We also present a (logarithmic) discretization scheme for the Ohmic bath in the system-bath model that gives converged results with just nine bath modes—a surprisingly small number for a model of a condensed phase reaction. Finally, we present some calculations of the transmission through an Eckart barrier which show that the present method provides a satisfactory (although not perfect) description of the deep quantum tunneling regime. Part of the reason for the success of the method is that it gives the exact quantum-mechanical rate constant for the transmission through a parabolic barrier, as we demonstrate analytically in the Appendix.

A refined ring polymer molecular dynamics theory of chemical reaction rates

Abstract: We further develop the ring polymer molecular dynamics (RPMD) method for calculating chemical reaction rates [I. R. Craig and D. E. Manolopoulos, J. Chem. Phys. 122, 084106 (2005)]. We begin by showing how the rate coefficient we obtained before can be calculated in a more efficient way by considering the side functions of the ring-polymer centroids, rather than averaging over the side functions of the individual ring-polymer beads. This has two distinct advantages. First, the statistics of the phase-space average over the ring-polymer coordinates and momenta are greatly improved. Second, the resulting flux-side correlation function converges to its long-time limit much more rapidly. Indeed the short-time limit of this flux-side correlation function already provides a “quantum transition state theory” approximation to the final rate coefficient. In cases where transition state recrossing effects are negligible, and the transition state dividing surface is put in the right place, the RPMD rate is therefore...

Quantum diffusion in liquid water from ring polymer molecular dynamics

Abstract: We have used the ring polymer molecular-dynamics method to study the translational and orientational motions in an extended simple point charge model of liquid water under ambient conditions. We find, in agreement with previous studies, that quantum-mechanical effects increase the self-diffusion coefficient D and decrease the relaxation times around the principal axes of the water molecule by a factor of around 1.5. These results are consistent with a simple Stokes-Einstein picture of the molecular motion and suggest that the main effect of the quantum fluctuations is to decrease the viscosity of the liquid by about a third. We then go on to consider the system-size scaling of the calculated self-diffusion coefficient and show that an appropriate extrapolation to the limit of infinite system size increases D by a further factor of around 1.3 over the value obtained from a simulation of a system containing 216 water molecules. These findings are discussed in light of the widespread use of classical molecular-dynamics simulations of this sort of size to model the dynamics of aqueous systems.

Quantum diffusion in liquid para-hydrogen from ring-polymer molecular dynamics.

Abstract: We have used the ring-polymer molecular dynamics method to calculate approximate Kubo-transformed velocity autocorrelation functions and self-diffusion coefficients for low-pressure liquid para-hydrogen at temperatures of 25 and 14 K. The resulting diffusion coefficients are shown to be consistent with experimental shear viscosities and the established finite-size relation D(L)~=D([infinity])–2.837kBT/6pietaL, where kB is the Boltzmann constant, T the absolute temperature, eta the shear viscosity, and L the length of the (cubic) simulation cell. The diffusion coefficients D(L) obtained in simulations with finite system sizes are therefore too small. However, the extrapolation to infinite system size corrects this deficiency and leads to excellent agreement with experimental results. This both demonstrates the influence of system-size effects on quantum mechanical diffusion coefficients and provides further evidence that ring-polymer molecular dynamics is an accurate as well as practical way of including quantum effects in condensed phase molecular dynamics.

Comment on "A centroid molecular dynamics study of liquid para hydrogen and ortho deuterium" [J. Chem. Phys. 121, 6412 (2004)].

Abstract: We show that the two phase points considered in the recent simulations of liquid para hydrogen by Hone and Voth lie in the liquid-vapor coexistence region of a purely classical molecular dynamics simulation. By contrast, their phase point for ortho deuterium was in the one-phase liquid region for both classical and quantum simulations. These observations are used to account for their report that quantum mechanical effects enhance the diffusion in liquid para hydrogen and decrease it in ortho deuterium.