抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

BIOE 402. Medical Technology Assessment. 2 or 3 hours. Bioentrepreneur course. Assessment of medical technology in the context of commercialization. Objectives, competition, market share, funding, pricing, manufacturing, growth, and intellectual property; many issues unique to biomedical products. Course Information: 2 undergraduate hours. 3 graduate hours. Prerequisite(s): Junior standing or above and consent of the instructor.

“Bioinformatics” 특집을 내면서

The identification of the genetic structure of populations from multilocus genotype data has become a central component of modern population-genetic data analysis. Application of model-based clustering programs often entails a number of steps, in which the user considers different modelling assumptions, compares results across different predetermined values of the number of assumed clusters (a parameter typically denoted K), examines multiple independent runs for each fixed value of K, and distinguishes among runs belonging to substantially distinct clustering solutions. Here, we present CLUMPAK (Cluster Markov Packager Across K), a method that automates the postprocessing of results of model-based population structure analyses. For analysing multiple independent runs at a single K value, CLUMPAK identifies sets of highly similar runs, separating distinct groups of runs that represent distinct modes in the space of possible solutions. This procedure, which generates a consensus solution for each distinct mode, is performed by the use of a Markov clustering algorithm that relies on a similarity matrix between replicate runs, as computed by the software CLUMPP. Next, CLUMPAK identifies an optimal alignment of inferred clusters across different values of K, extending a similar approach implemented for a fixed K in CLUMPP and simplifying the comparison of clustering results across different K values. CLUMPAK incorporates additional features, such as implementations of methods for choosing K and comparing solutions obtained by different programs, models, or data subsets. CLUMPAK, available at http://clumpak.tau.ac.il, simplifies the use of model-based analyses of population structure in population genetics and molecular ecology.

/pdf/clumpak-a-program-for-identifying-clustering-modes-and-4ljqxgdc53.pdf

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

Cities may represent one of the most challenging environments for carnivorous mammals. For example, cities have a dearth of vegetation and other natural resources, coupled with increased habitat fragmentation and an abundance of roads as well as altered climate (e.g. temperature, light, rainfall and water runoff). It is therefore intriguing that several carnivore species have become established in cities across the globe. Medium-sized carnivores such as the red fox, coyote, Eurasian badger and raccoon not only survive in cities but also have managed to exploit anthropogenic food sources and shelter to their significant advantage, achieving higher population densities than are found under natural conditions. In addition, although they may not live permanently within cities, even large carnivores such as bears, wolves and hyaenas derive significant benefit from living adjacent to urbanized areas. In this review, we examine the history of urban adaptation by mammalian carnivores, explore where they are living, what they eat, what kills them and the behavioural consequences of living in urban areas. We review the biology of urban carnivores, exploring traits such as body size and dietary flexibility. Finally, we consider the consequences of having populations of carnivores in urbanized areas, both for humans and for these charismatic mammals. In conclusion, in a time of massive environmental change across the globe, the continuing encroachment of urbanization upon wilderness areas is substantially reducing the availability of natural habitats for many species; therefore, understanding the biology of any taxon that is able to adapt to and exploit anthropogenically disturbed systems must aid us in both controlling and developing suitable conservation measures for the future of such species.

https://zslpublications.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1469-7998.2011.00887.x

Big city life: carnivores in urban environments

Cats are generalist predators that have been widely introduced to the world’s ~179 000 islands. Once introduced to islands, cats prey on a variety of native species many of which lack evolved defenses against mammalian predators and can suffer severe population declines and even extinction. As islands house a disproportionate share of terrestrial biodiversity, the impacts of invasive cats on islands may have significant biodiversity impacts. Much of this threatened biodiversity can be protected by eradicating cats from islands. Information on the relative impacts of cats on different native species in different types of island ecosystems can increase the efficiency of this conservation tool. We reviewed feral cat impacts on native island vertebrates. Impacts of feral cats on vertebrates have been reported from at least 120 different islands on at least 175 vertebrates (25 reptiles, 123 birds, and 27 mammals), many of which are listed by the International Union for the Conservation of Nature. A meta-analysis suggests that cat impacts were greatest on endemic species, particularly mammals and greater when non-native prey species were also introduced. Feral cats on islands are responsible for at least 14% global bird, mammal, and reptile extinctions and are the principal threat to almost 8% of critically endangered birds, mammals, and reptiles.

/pdf/a-global-review-of-the-impacts-of-invasive-cats-on-island-ii3udm1r4f.pdf

A global review of the impacts of invasive cats on island endangered vertebrates

The world's domestic cats carry patterns of sequence variation in their genome that reflect a history of domestication and breed development. A genetic assessment of 979 domestic cats and their wild progenitors-Felis silvestris silvestris (European wildcat), F. s. lybica (Near Eastern wildcat), F. s. ornata (central Asian wildcat), F. s. cafra (southern African wildcat), and F. s. bieti (Chinese desert cat)-indicated that each wild group represents a distinctive subspecies of Felis silvestris. Further analysis revealed that cats were domesticated in the Near East, probably coincident with agricultural village development in the Fertile Crescent. Domestic cats derive from at least five founders from across this region, whose descendants were transported across the world by human assistance.

/pdf/the-near-eastern-origin-of-cat-domestication-1z8p8dhl8r.pdf

Eric H. Harley

Papers

The Near Eastern Origin of Cat Domestication