: The unpolarized absorption and circular dichroism spectra of the fundamental vibrational transitions of the chiral molecule, 4-methyl-2-oxetanone, are calculated ab initio. Harmonic force fields are obtained using Density Functional Theory (DFT), MP2, and SCF methodologies and a 5S4P2D/3S2P (TZ2P) basis set. DFT calculations use the Local Spin Density Approximation (LSDA), BLYP, and Becke3LYP (B3LYP) density functionals. Mid-IR spectra predicted using LSDA, BLYP, and B3LYP force fields are of significantly different quality, the B3LYP force field yielding spectra in clearly superior, and overall excellent, agreement with experiment. The MP2 force field yields spectra in slightly worse agreement with experiment than the B3LYP force field. The SCF force field yields spectra in poor agreement with experiment.The basis set dependence of B3LYP force fields is also explored: the 6-31G* and TZ2P basis sets give very similar results while the 3-21G basis set yields spectra in substantially worse agreements with experiment. jg

Ab initio calculation of vibrational absorption and circular dichroism spectra using density functional force fields

The nature and characteristics of the CH/π interaction are discussed by comparison with other weak molecular forces such as the CH/O and OH/π interaction. The CH/π interaction is a kind of hydrogen bond operating between a soft acid CH and a soft base π-system (double and triple bonds, C6 and C5 aromatic rings, heteroaromatics, convex surfaces of fullerenes and nanotubes). The consequences of CH/π hydrogen bonds in supramolecular chemistry are reviewed on grounds of recent crystallographic findings and database analyses. The topics include intramolecular interactions, crystal packing (organic and organometallic compounds), host/guest complexes (cavity-type inclusion compounds of cyclodextrins and synthetic macrocyclic hosts such as calixarenes, catenanes, rotaxanes and pseudorotaxanes), lattice-inclusion type clathrates (including liquid crystals, porphyrin derivatives, cyclopentadienyl compounds and C60 fullerenes), enantioselective clathrate formation, catalytic enantioface discriminating reactions and solid-state photoreaction. The implications of the CH/π concept for crystal engineering and drug design are evident.

CH/π hydrogen bonds in crystals

Calixarenes are macrocyclic molecules, like crown ethers and cyclodextrins.1-7 Calixarenes made up of phenol and methylene units have many conformational isomers because of two possible rotational modes of the phenol unit: the oxygen-through-theannulus rotation and the para-substituent-throughthe-annulus rotation (Figure 1). The conformational isomers thus yielded afford a great number of unique cavities with the different size and the different shape. Recently, a number of strategies have been exploited by which not only the conformation of calix[4]arenes, but also those of calix[6]arenes and calix[8]arenes, can be immobilized. This means that our group can now design various calixarene-based receptors that show high selectivity for guest molecules and metal cations. In this review article, our group describe novel strategies for cavity design using calix[n]arene skeletons, strategies that are intended to allow complexation of specific molecular targets or metal ions.

Novel Cavity Design Using Calix[n]arene Skeletons: Toward Molecular Recognition and Metal Binding.

Manufactured nanoparticles: An overview of their chemistry, interactions and potential environmental implications

Spontaneous self-assembly processes that lead to discretespherical molecular structures are common in nature. Sphericalviruses1 (such ashepatitis B) and fullerenes2 are well-known examples inwhich non-covalent and covalent forces,respectively, direct the assembly of smaller subunits intolarger superstructures. A common feature of theseshell-like architectures is their ability to encapsulateneutral and/or charged guests whose size, shape and chemicalexteriors complement those of the host's innersurface3,4. Their interiors can often beregarded as a new phase of matter5, capable of controlling the flowof reactants, transients and products, and of catalysingreactions of both chemical and biological relevance. Suchproperties have inspired the recent emergence ofmonomolecular5,6,7 and supramolecular dimeric molecularcapsules8,9, many of which have been basedon the head-to-head alignment of bowl-shapedpolyaromatic macrocycles such as calix[4]arenes5,7,9. But true structural mimicry offrameworks akin to viruses and fullerenes, which are based onthe self-assembly of n > 3 subunits,and where surface curvature is supplied by edge sharing of regularpolygons, has remained elusive. Here we present anexample of such a system: a chiral spherical molecular assemblyheld together by 60 hydrogen bonds (1) (Fig. 1). We demonstrate the ability of 1, which consists of six calix[4]resorcinarenes 2 and eight water molecules, to self-assemble and maintain its structure in apolar media and to encapsulate guest species within a well-defined cavity that possesses an internal volume of about 1,375 A3. Single crystal X-ray analysis shows that its topology resembles that of a spherical virus1 and conforms to the structure of a snub cube, one of the 13 Archimedean solids10.

A chiral spherical molecular assembly held together by 60 hydrogen bonds

In attempting the metallation of 1,2-bis(diphenylarsino)ethane, the title compound KAsPh2·2(1,4-dioxane) was obtained and characterised with a single crystal X-ray structure determination. Like the sodium counterpart, which is a monosolvate, NaAsPh2·1,4-dioxane, the complex may be considered as a two-dimensional polymer, the potassium atoms being linked by bridging 1,4-dioxane units, the oxygen atoms of which form a quasi-square planar array about the potassium atom (K–O 2.676–2.839(3) A). Unlike the sodium complex, in which arsenide bridging is an intrinsic motif in the construction of the polymer, the K⋯As distance here is long (3.4662(10) A), with the anion being terminal/monodentate, and counterposed in what may be considered a quasi-octahedral coordination sphere, by a trans-approach to two atoms of a neighbouring aromatic ring (K⋯C(ar) 3.361, 3.416(4) A), extending the polymer in the third dimension.

Unusual Potassium-η2-Aromatic Interactions in the Crystal Structure of the Diphenylarsenide Transfer Reagent, KAsPh2· 2(1,4-Dioxane)

Element 44 – Ruthenium

Metal Complexes for Molecular Electronics

/pdf/foreword-to-dedication-to-allan-white-57yec1z1b5.pdf

Foreword to 'Dedication to Allan White'

The modification of conjugated organic compounds with organometallic moieties allows the modulation of the electronic and optoelectronic properties of such compounds and lends them to a variety of material applications. The organometallic complexes [M(Cp′)(L)n] (M = Ru or Fe; Cp′ = cyclopentadiene (Cp) or pentamethylcyclopentadiene (Cp*); (L)n = (PPh3)2 or 1,2-bi(diphenylphosphino)ethane (dppe)) and [M(L)n] (M = Ru; (L)n = (dppe)2 or (P(OEt)3)4; or M = Pt; (L)n = (PEt3)2, (PPh3)2 or tricyclohexylphosphine, (PCy3)2) modified with a 5-ethynyl-1,3,3-trimethyl-3H-indole ligand were prepared and characterised by NMR spectroscopy, IR and single-crystal X-ray diffraction. Cyclic voltammetry and IR spectroelectrochemistry of the ruthenium systems showed a single-electron oxidation localised over the M–C≡C–aryl moiety. The N-heteroatom of the indole ligand showed Lewis base properties and was able to extract a proton from a vinylidene intermediate as well as coordinate to CuI. Examples from the wire-like compounds were also studied by single-molecule break junction experiments but molecular junction formation was not observed. This is most likely attributable to the binding characteristics of the substituted terminal indole groups used here to the gold contacts.

/pdf/evaluation-of-the-5-ethynyl-133-trimethyl-3h-indole-ligand-1jiabsv4.pdf

George A. Koutsantonis

Papers

Unusual Potassium-η2-Aromatic Interactions in the Crystal Structure of the Diphenylarsenide Transfer Reagent, KAsPh2· 2(1,4-Dioxane)

Element 44 – Ruthenium

Metal Complexes for Molecular Electronics

Foreword to 'Dedication to Allan White'

Evaluation of the 5-ethynyl-1,3,3-trimethyl-3H-indole ligand for molecular materials applications