—The newly inaugurated Research Resource for Complex Physiologic Signals, which was created under the auspices of the National Center for Research Resources of the National Institutes of He...

http://ecg.mit.edu/george/publications/physionet-circ-2000.pdf

PhysioBank, PhysioToolkit, and PhysioNet: components of a new research resource for complex physiologic signals.

Anomaly detection is an important problem that has been researched within diverse research areas and application domains. Many anomaly detection techniques have been specifically developed for certain application domains, while others are more generic. This survey tries to provide a structured and comprehensive overview of the research on anomaly detection. We have grouped existing techniques into different categories based on the underlying approach adopted by each technique. For each category we have identified key assumptions, which are used by the techniques to differentiate between normal and anomalous behavior. When applying a given technique to a particular domain, these assumptions can be used as guidelines to assess the effectiveness of the technique in that domain. For each category, we provide a basic anomaly detection technique, and then show how the different existing techniques in that category are variants of the basic technique. This template provides an easier and more succinct understanding of the techniques belonging to each category. Further, for each category, we identify the advantages and disadvantages of the techniques in that category. We also provide a discussion on the computational complexity of the techniques since it is an important issue in real application domains. We hope that this survey will provide a better understanding of the different directions in which research has been done on this topic, and how techniques developed in one area can be applied in domains for which they were not intended to begin with.

/pdf/anomaly-detection-a-survey-1x33g9m0a3.pdf

Anomaly detection: A survey

Entropy, as it relates to dynamical systems, is the rate of information production. Methods for estimation of the entropy of a system represented by a time series are not, however, well suited to analysis of the short and noisy data sets encountered in cardiovascular and other biological studies. Pincus introduced approximate entropy (ApEn), a set of measures of system complexity closely related to entropy, which is easily applied to clinical cardiovascular and other time series. ApEn statistics, however, lead to inconsistent results. We have developed a new and related complexity measure, sample entropy (SampEn), and have compared ApEn and SampEn by using them to analyze sets of random numbers with known probabilistic character. We have also evaluated cross-ApEn and cross-SampEn, which use cardiovascular data sets to measure the similarity of two distinct time series. SampEn agreed with theory much more closely than ApEn over a broad range of conditions. The improved accuracy of SampEn statistics should make them useful in the study of experimental clinical cardiovascular and other biological time series.

Physiological time-series analysis using approximate entropy and sample entropy

Acute kidney injury (AKI) is a complex disorder for which currently there is no accepted definition. Having a uniform standard for diagnosing and classifying AKI would enhance our ability to manage these patients. Future clinical and translational research in AKI will require collaborative networks of investigators drawn from various disciplines, dissemination of information via multidisciplinary joint conferences and publications, and improved translation of knowledge from pre-clinical research. We describe an initiative to develop uniform standards for defining and classifying AKI and to establish a forum for multidisciplinary interaction to improve care for patients with or at risk for AKI. Members representing key societies in critical care and nephrology along with additional experts in adult and pediatric AKI participated in a two day conference in Amsterdam, The Netherlands, in September 2005 and were assigned to one of three workgroups. Each group's discussions formed the basis for draft recommendations that were later refined and improved during discussion with the larger group. Dissenting opinions were also noted. The final draft recommendations were circulated to all participants and subsequently agreed upon as the consensus recommendations for this report. Participating societies endorsed the recommendations and agreed to help disseminate the results. The term AKI is proposed to represent the entire spectrum of acute renal failure. Diagnostic criteria for AKI are proposed based on acute alterations in serum creatinine or urine output. A staging system for AKI which reflects quantitative changes in serum creatinine and urine output has been developed. We describe the formation of a multidisciplinary collaborative network focused on AKI. We have proposed uniform standards for diagnosing and classifying AKI which will need to be validated in future studies. The Acute Kidney Injury Network offers a mechanism for proceeding with efforts to improve patient outcomes.

Acute Kidney Injury Network: report of an initiative to improve outcomes in acute kidney injury

MIMIC-III ('Medical Information Mart for Intensive Care') is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. Data includes vital signs, medications, laboratory measurements, observations and notes charted by care providers, fluid balance, procedure codes, diagnostic codes, imaging reports, hospital length of stay, survival data, and more. The database supports applications including academic and industrial research, quality improvement initiatives, and higher education coursework.

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MIMIC-III, a freely accessible critical care database

The MIT-BIH Arrhythmia Database was the first generally available set of standard test material for evaluation of arrhythmia detectors, and it has been used for that purpose as well as for basic research into cardiac dynamics at about 500 sites worldwide since 1980. It has lived a far longer life than any of its creators ever expected. Together with the American Heart Association Database, it played an interesting role in stimulating manufacturers of arrhythmia analyzers to compete on the basis of objectively measurable performance, and much of the current appreciation of the value of common databases, both for basic research and for medical device development and evaluation, can be attributed to this experience. In this article, we briefly review the history of the database, describe its contents, discuss what we have learned about database design and construction, and take a look at some of the later projects that have been stimulated by both the successes and the limitations of the MIT-BIH Arrhythmia Database.

The impact of the MIT-BIH Arrhythmia Database

Presents a QT database designed for evaluation of algorithms that detect waveform boundaries in the ECG. The database consists of 105 fifteen-minute excerpts of two-channel ECG Holter recordings, chosen to include a broad variety of QRS and ST-T morphologies. Waveform boundaries for a subset of beats in these recordings have been manually determined by expert annotators using an interactive graphic display to view both signals simultaneously and to insert the annotations. Examples of each morphology were included in this subset of annotated beats; at least 30 beats in each record, 3622 beats in all, were manually annotated in the database. In 11 records, two independent sets of annotations have been included, to allow inter-observer variability studies. The QT Database is available on a CD-ROM in the format previously used for the MIT-BIH Arrhythmia Database and the European ST-T Database, from which some of the recordings in the QT Database have been obtained.

/pdf/a-database-for-evaluation-of-algorithms-for-measurement-of-2zc0t5jrkb.pdf

A database for evaluation of algorithms for measurement of QT and other waveform intervals in the ECG

BACKGROUND: Despite much recent interest in quantification of heart rate variability (HRV), the prognostic value of conventional measures of HRV and of newer indices based on nonlinear dynamics is not universally accepted. METHODS AND RESULTS: We have designed algorithms for analyzing ambulatory ECG recordings and measuring HRV without human intervention, using robust methods for obtaining time-domain measures (mean and SD of heart rate), frequency-domain measures (power in the bands of 0.001 to 0.01 Hz [VLF], 0.01 to 0.15 Hz [LF], and 0.15 to 0.5 Hz [HF] and total spectral power [TP] over all three of these bands), and measures based on nonlinear dynamics (approximate entropy [ApEn], a measure of complexity, and detrended fluctuation analysis [DFA], a measure of long-term correlations). The study population consisted of chronic congestive heart failure (CHF) case patients and sex- and age-matched control subjects in the Framingham Heart Study. After exclusion of technically inadequate studies and those with atrial fibrillation, we used these algorithms to study HRV in 2-hour ambulatory ECG recordings of 69 participants (mean age, 71.7+/-8.1 years). By use of separate Cox proportional-hazards models, the conventional measures SD (P .3), were not. In multivariable models, DFA was of borderline predictive significance (P=.06) after adjustment for the diagnosis of CHF and SD. CONCLUSIONS: These results demonstrate that HRV analysis of ambulatory ECG recordings based on fully automated methods can have prognostic value in a population-based study and that nonlinear HRV indices may contribute prognostic value to complement traditional HRV measures.

Predicting Survival in Heart Failure Case and Control Subjects by Use of Fully Automated Methods for Deriving Nonlinear and Conventional Indices of Heart Rate Dynamics

Fourier analysis of heart rate (HR) may be used to characterize overall HR variability as well as low- and high-frequency components attributable to sympathetic and vagal influences, respectively. We analyzed HR spectral characteristics of 12 healthy young (18-35 years) and 10 healthy old (71-94 years) subjects before and during 60 degrees head-up tilt. Total spectral power in the 0.01-0.40-Hz frequency range and low-frequency (0.06-0.10 Hz) and high-frequency (0.15-0.40 Hz) components of the HR power spectrum were significantly lower in old than in young subjects in supine and upright positions. To characterize and compare overall HR variability in young and old subjects, we computed the regression lines relating the log amplitude to the log frequency of the supine HR spectra (l/fx plots). The regression lines for old subjects were lower and steeper (mean slope, -0.78 [5%, 95% confidence limits (CL), -0.73, -0.83]) than in young (mean slope, -0.67 [CL, -0.62, -0.72]), indicating not only reduced overall spectral amplitude but also relatively greater attenuation of high-frequency HR components in the old subjects. This finding illustrates a novel way to quantify the loss of autonomic influences on HR regulation as a function of age. During postural tilt, HR variability was unchanged in the old subjects. For the entire group of young subjects, total HR variability increased during tilt. Six young subjects developed vasovagal syncope during tilt, enabling us to examine differences in the HR spectra of these subjects while they were asymptomatic before syncope.(ABSTRACT TRUNCATED AT 250 WORDS)

George B. Moody

Papers

PhysioBank, PhysioToolkit, and PhysioNet: components of a new research resource for complex physiologic signals.

The impact of the MIT-BIH Arrhythmia Database

A database for evaluation of algorithms for measurement of QT and other waveform intervals in the ECG

Predicting Survival in Heart Failure Case and Control Subjects by Use of Fully Automated Methods for Deriving Nonlinear and Conventional Indices of Heart Rate Dynamics

Spectral characteristics of heart rate variability before and during postural tilt. Relations to aging and risk of syncope.