An overview of the self-organizing map algorithm, on which the papers in this issue are based, is presented in this article.

The Self-Organizing Map

With the growing volume of online information, recommender systems have been an effective strategy to overcome information overload. The utility of recommender systems cannot be overstated, given their widespread adoption in many web applications, along with their potential impact to ameliorate many problems related to over-choice. In recent years, deep learning has garnered considerable interest in many research fields such as computer vision and natural language processing, owing not only to stellar performance but also to the attractive property of learning feature representations from scratch. The influence of deep learning is also pervasive, recently demonstrating its effectiveness when applied to information retrieval and recommender systems research. The field of deep learning in recommender system is flourishing. This article aims to provide a comprehensive review of recent research efforts on deep learning-based recommender systems. More concretely, we provide and devise a taxonomy of deep learning-based recommendation models, along with a comprehensive summary of the state of the art. Finally, we expand on current trends and provide new perspectives pertaining to this new and exciting development of the field.

Deep Learning Based Recommender System: A Survey and New Perspectives

Context Electroencephalography (EEG) is a complex signal and can require several years of training, as well as advanced signal processing and feature extraction methodologies to be correctly interpreted. Recently, deep learning (DL) has shown great promise in helping make sense of EEG signals due to its capacity to learn good feature representations from raw data. Whether DL truly presents advantages as compared to more traditional EEG processing approaches, however, remains an open question. Objective In this work, we review 154 papers that apply DL to EEG, published between January 2010 and July 2018, and spanning different application domains such as epilepsy, sleep, brain-computer interfacing, and cognitive and affective monitoring. We extract trends and highlight interesting approaches from this large body of literature in order to inform future research and formulate recommendations. Methods Major databases spanning the fields of science and engineering were queried to identify relevant studies published in scientific journals, conferences, and electronic preprint repositories. Various data items were extracted for each study pertaining to (1) the data, (2) the preprocessing methodology, (3) the DL design choices, (4) the results, and (5) the reproducibility of the experiments. These items were then analyzed one by one to uncover trends. Results Our analysis reveals that the amount of EEG data used across studies varies from less than ten minutes to thousands of hours, while the number of samples seen during training by a network varies from a few dozens to several millions, depending on how epochs are extracted. Interestingly, we saw that more than half the studies used publicly available data and that there has also been a clear shift from intra-subject to inter-subject approaches over the last few years. About [Formula: see text] of the studies used convolutional neural networks (CNNs), while [Formula: see text] used recurrent neural networks (RNNs), most often with a total of 3-10 layers. Moreover, almost one-half of the studies trained their models on raw or preprocessed EEG time series. Finally, the median gain in accuracy of DL approaches over traditional baselines was [Formula: see text] across all relevant studies. More importantly, however, we noticed studies often suffer from poor reproducibility: a majority of papers would be hard or impossible to reproduce given the unavailability of their data and code. Significance To help the community progress and share work more effectively, we provide a list of recommendations for future studies and emphasize the need for more reproducible research. We also make our summary table of DL and EEG papers available and invite authors of published work to contribute to it directly. A planned follow-up to this work will be an online public benchmarking portal listing reproducible results.

https://iopscience.iop.org/article/10.1088/1741-2552/ab260c/pdf

Deep learning-based electroencephalography analysis: a systematic review.

With the ever-growing volume of online information, recommender systems have been an effective strategy to overcome such information overload. The utility of recommender systems cannot be overstated, given its widespread adoption in many web applications, along with its potential impact to ameliorate many problems related to over-choice. In recent years, deep learning has garnered considerable interest in many research fields such as computer vision and natural language processing, owing not only to stellar performance but also the attractive property of learning feature representations from scratch. The influence of deep learning is also pervasive, recently demonstrating its effectiveness when applied to information retrieval and recommender systems research. Evidently, the field of deep learning in recommender system is flourishing. This article aims to provide a comprehensive review of recent research efforts on deep learning based recommender systems. More concretely, we provide and devise a taxonomy of deep learning based recommendation models, along with providing a comprehensive summary of the state-of-the-art. Finally, we expand on current trends and provide new perspectives pertaining to this new exciting development of the field.

Deep Learning based Recommender System: A Survey and New Perspectives.

Anomaly detection is an important problem that has been well-studied within diverse research areas and application domains. The aim of this survey is two-fold, firstly we present a structured and comprehensive overview of research methods in deep learning-based anomaly detection. Furthermore, we review the adoption of these methods for anomaly across various application domains and assess their effectiveness. We have grouped state-of-the-art research techniques into different categories based on the underlying assumptions and approach adopted. Within each category we outline the basic anomaly detection technique, along with its variants and present key assumptions, to differentiate between normal and anomalous behavior. For each category, we present we also present the advantages and limitations and discuss the computational complexity of the techniques in real application domains. Finally, we outline open issues in research and challenges faced while adopting these techniques.

Deep Learning for Anomaly Detection: A Survey.

Recent advances in attention networks have gained enormous interest in time series data mining. Various attention mechanisms are proposed to soft-select relevant timestamps from temporal data by assigning learnable attention scores. However, many real-world tasks involve complex multivariate time series that continuously measure target from multiple views. Different views may provide information of different levels of quality varied over time, and thus should be assigned with different attention scores as well. Unfortunately, the existing attention-based architectures cannot be directly used to jointly learn the attention scores in both time and view domains, due to the data structure complexity. Towards this end, we propose a novel multi-view attention network, namely MuVAN, to learn fine-grained attentional representations from multivariate temporal data. MuVAN is a unified deep learning model that can jointly calculate the two-dimensional attention scores to estimate the quality of information contributed by each view within different timestamps. By constructing a hybrid focus procedure, we are able to bring more diversity to attention, in order to fully utilize the multi-view information. To evaluate the performance of our model, we carry out experiments on three real-world benchmark datasets. Experimental results show that the proposed MuVAN model outperforms the state-of-the-art deep representation approaches in different real-world tasks. Analytical results through a case study demonstrate that MuVAN can discover discriminative and meaningful attention scores across views over time, which improves the feature representation of multivariate temporal data.

MuVAN: A Multi-view Attention Network for Multivariate Temporal Data

Epileptic seizure detection using multi-channel scalp electroencephalogram (EEG) signals has gained increasing attention in clinical therapy. Recently, researchers attempt to employ deep learning techniques with channel selection to determine critical channels. However, existing models with such hard selection procedure do not take dynamic constraints into account, since the irrelevant channels vary significantly across different situations. To address these issues, we propose ChannelAtt, an end-to-end multi-view deep learning model with channel-aware attention mechanism, to express multi-channel EEG signals in a high-level space with interpretable meanings. ChannelAtt jointly learns both multi-view representation and its contribution scores. We propose two attention mechanisms to learn the attentional representations of multi-channel EEG signals in time-frequency domain. Experimental results show that the proposed ChannelAtt model outperforms the baselines in detecting epileptic seizures. Analytical results of a case study demonstrate that the learned attentional representations are meaningful.

A novel channel-aware attention framework for multi-channel EEG seizure detection via multi-view deep learning

Wave2Vec: Deep representation learning for clinical temporal data

A text corpus typically contains two types of context information -- global context and local context. Global context carries topical information which can be utilized by topic models to discover topic structures from the text corpus, while local context can train word embeddings to capture semantic regularities reflected in the text corpus. This encourages us to exploit the useful information in both the global and the local context information. In this paper, we propose a unified language model based on matrix factorization techniques which 1) takes the complementary global and local context information into consideration simultaneously, and 2) models topics and learns word embeddings collaboratively. We empirically show that by incorporating both global and local context, this collaborative model can not only significantly improve the performance of topic discovery over the baseline topic models, but also learn better word embeddings than the baseline word embedding models. We also provide qualitative analysis that explains how the cooperation of global and local context information can result in better topic structures and word embeddings.

Collaboratively Improving Topic Discovery and Word Embeddings by Coordinating Global and Local Contexts

Motivation MEDLINE is the primary bibliographic database maintained by National Library of Medicine (NLM). MEDLINE citations are indexed with Medical Subject Headings (MeSH), which is a controlled vocabulary curated by the NLM experts. This greatly facilitates the applications of biomedical research and knowledge discovery. Currently, MeSH indexing is manually performed by human experts. To reduce the time and monetary cost associated with manual annotation, many automatic MeSH indexing systems have been proposed to assist manual annotation, including DeepMeSH and NLM's official model Medical Text Indexer (MTI). However, the existing models usually rely on the intermediate results of other models and suffer from efficiency issues. We propose an end-to-end framework, MeSHProbeNet (formerly named as xgx), which utilizes deep learning and self-attentive MeSH probes to index MeSH terms. Each MeSH probe enables the model to extract one specific aspect of biomedical knowledge from an input article, thus comprehensive biomedical information can be extracted with different MeSH probes and interpretability can be achieved at word level. MeSH terms are finally recommended with a unified classifier, making MeSHProbeNet both time efficient and space efficient. Results MeSHProbeNet won the first place in the latest batch of Task A in the 2018 BioASQ challenge. The result on the last test set of the challenge is reported in this paper. Compared with other state-of-the-art models, such as MTI and DeepMeSH, MeSHProbeNet achieves the highest scores in all the F-measures, including Example Based F-Measure, Macro F-Measure, Micro F-Measure, Hierarchical F-Measure and Lowest Common Ancestor F-measure. We also intuitively show how MeSHProbeNet is able to extract comprehensive biomedical knowledge from an input article.

Guangxu Xun

Papers

MuVAN: A Multi-view Attention Network for Multivariate Temporal Data

A novel channel-aware attention framework for multi-channel EEG seizure detection via multi-view deep learning

Wave2Vec: Deep representation learning for clinical temporal data

Collaboratively Improving Topic Discovery and Word Embeddings by Coordinating Global and Local Contexts

MeSHProbeNet: a self-attentive probe net for MeSH indexing.