H
H Phan
Researcher at Wellcome Trust Centre for Human Genetics
Publications - 3
Citations - 958
H Phan is an academic researcher from Wellcome Trust Centre for Human Genetics. The author has contributed to research in topics: Medicine & Livestock. The author has an hindex of 1, co-authored 1 publications receiving 786 citations.
Papers
More filters
Journal ArticleDOI
Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications
Andrew J. Rimmer,H Phan,Iain Mathieson,Zamin Iqbal,Twigg Srf.,Wilkie Aom.,Gil McVean,Gil McVean,Gerton Lunter +8 more
TL;DR: The performance of Platypus is demonstrated by comparing with SAMtools and GATK on whole-genome and exome-capture data, by identifying de novo variation in 15 parent-offspring trios with high sensitivity and specificity, and by estimating human leukocyte antigen genotypes directly from variant calls.
Journal ArticleDOI
Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape
Dishon Muloi,Bryan A. Wee,Deirdre McClean,Melissa J. Ward,Louise Pankhurst,H Phan,Alasdair Ivens,Velma Kivali,Alice N. Kiyong'a,Christine Ndinda,Nduhiu Gitahi,Tom T. Ouko,James M. Hassell,Titus Imboma,James M. Akoko,Maurice K. Murungi,Samuel M. C. Njoroge,Patrick Muinde,Yukiko Nakamura,Lorren Alumasa,Erin Furmaga,T. D. Kaitho,Elin M Öhgren,Fredrick Amanya,Allan Ogendo,Daniel J. Wilson,Judy M. Bettridge,John Kiiru,Catherine Kyobutungi,Cecila Tacoli,Erastus K. Kang'ethe,Julio D. Dávila,Samuel Kariuki,Timothy P. Robinson,Jonathan Rushton,Mark E. J. Woolhouse,Eric M. Fèvre +36 more
TL;DR: This article performed whole-genome sequencing of 1,338 E. coli isolates from 99 households across Nairobi, Kenya, to investigate its distribution among host species in this rapidly developing urban landscape.
Journal ArticleDOI
Epidemiological connectivity between humans and animals across an urban landscape.
James M. Hassell,Dishon Muloi,Kimberly VanderWaal,Melissa J. Ward,Judy M. Bettridge,Nduhiu Gitahi,Tom T. Ouko,Titus Imboma,James M. Akoko,M. Karani,Patrick Muinde,Yukiko Nakamura,Lorren Alumasa,Erin Furmaga,T. D. Kaitho,Fredrick Amanya,Allan Ogendo,Francesco Fava,Bryan A. Wee,H Phan,John Kiiru,Erastus K. Kang'ethe,Simon Kariuki,Timothy P. Robinson,Michael Begon,Mark E. J. Woolhouse,Eric M. Fèvre +26 more
TL;DR: In this paper , the authors studied how bacterial genes are shared between wild animals, livestock, and humans (n = 1,428) across Nairobi, Kenya-one of the world's most rapidly developing cities.