Summary
Quantitative aspects of the study of animal and human behaviour are increasingly relevant to test hypotheses and find empirical support for them. At the same time, photo and video cameras can store a large number of video recordings and are often used to monitor the subjects remotely. Researchers frequently face the need to code considerable quantities of video recordings with relatively flexible software, often constrained by species-specific options or exact settings.
BORIS is a free, open-source and multiplatform standalone program that allows a user-specific coding environment to be set for a computer-based review of previously recorded videos or live observations. Being open to user-specific settings, the program allows a project-based ethogram to be defined that can then be shared with collaborators, or can be imported or modified.
Projects created in BORIS can include a list of observations, and each observation may include one or two videos (e.g. simultaneous screening of visual stimuli and the subject being tested; recordings from different sides of an aquarium). Once the user has set an ethogram, including state or point events or both, coding can be performed using previously assigned keys on the computer keyboard. BORIS allows definition of an unlimited number of events (states/point events) and subjects.
Once the coding process is completed, the program can extract a time-budget or single or grouped observations automatically and present an at-a-glance summary of the main behavioural features. The observation data and time-budget analysis can be exported in many common formats (TSV, CSV, ODF, XLS, SQL and JSON). The observed events can be plotted and exported in various graphic formats (SVG, PNG, JPG, TIFF, EPS and PDF).

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BORIS: a free, versatile open-source event-logging software for video/audio coding and live observations

The Roter interaction analysis system (RIAS): utility and flexibility for analysis of medical interactions.

The need for automating behavioral observations and the evolution of systems developed for that purpose is outlined. Video tracking systems enable researchers to study behavior in a reliable and consistent way and over longer time periods than if they were using manual recording. To overcome limitations of currently available systems, we have designed EthoVision, an integrated system for automatic recording of activity, movement, and interactions of animals. The EthoVision software is presented, highlighting some key features that separate EthoVision from other systems: easy file management, independent variable definition, flexible arena and zone design, several methods of data acquisition allowing identification and tracking of multiple animals in multiple arenas, and tools for visualization of the tracks and calculation of a range of analysis parameters. A review of studies using EthoVision is presented, demonstrating the system’s use in a wide variety of applications. Possible future directions for development are discussed.

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EthoVision: a versatile video tracking system for automation of behavioral experiments.

This article deals with the definition and detection of particular kinds of temporal patterns in behavior, which are sometimes obvious or well known, but other times difficult to detect, either directly or with standard statistical methods. Characteristics of well-known behavior patterns were abstracted and combined in order to define a scale-independent, hierarchical time pattern type, called aT-pattern. A corresponding detection algorithm was developed and implemented in a computer program, called Theme. The proposed pattern typology and detection algorithm are based on the definition and detection of a particular relationship between pairs of events in a time series, called acritical interval relation. The proposed bottom-up, level-by-level (or breadth-first) search algorithm is based on a binary tree of such relations. The algorithm first detects simpler patterns. Then, more complex and complete patterns evolve through the connection of simpler ones, pattern completeness competition, and pattern selection. Interindividual T-patterns in a quarter-hour interaction between two children are presented, showing that complex hidden T-patterns may be found by Theme in such behavioral streams. Finally, implications for studies of complexity, self-organization, and dynamic patterns are discussed.

/pdf/discovering-hidden-time-patterns-in-behavior-t-patterns-and-27ivhwb7nw.pdf

Discovering hidden time patterns in behavior: T-patterns and their detection

BP4D-Spontaneous: a high-resolution spontaneous 3D dynamic facial expression database

The Observer Video-Pro is a system for collecting, managing, analyzing, and presenting observational data. It integrates The Observer software with time code and multimedia hardware components. It extends the functionality of a conventional real-time event recording program in various ways. Observational data can be collected, reviewed, and edited with synchronized display of the corresponding video images. For optimal visual feedback during coding, one can display the video image in a window on the computer screen. Video playback from either a VCR or a digital media file can be controlled by the computer, allowing software-controlled jog, shuttle, and search functions. Besides a wide range of VCRs, The Observer Video-Pro supports all major digital video file formats. The software allows the user to summarize research findings in numerical, graphical, or multimedia format. One can create a time--event plot for a quick glance at the temporal structure of the observed process, or run specific analysis procedures and generate reports with statistics. An Event Summary function is available for exploratory and qualitative analysis. Video material can be summarized in a Video Play List, which allows on-screen summary presentations or the creation of highlight compilations on tape, CD, or other media. Video images can be captured and saved as disk files, for use as illustrations in documents, slides for presentations, and so forth. In this paper we describe the design and operation of the system, illustrated with a case study from research on Repetitive Strain Injury (RSI).

/pdf/the-observer-video-pro-new-software-for-the-collection-wiwjswvype.pdf

Han Jansen

Papers

The Observer Video-Pro: new software for the collection, management, and presentation of time-structured data from videotapes and digital media files.