Today's Web-enabled deluge of electronic data calls for automated methods of data analysis. Machine learning provides these, developing methods that can automatically detect patterns in data and then use the uncovered patterns to predict future data. This textbook offers a comprehensive and self-contained introduction to the field of machine learning, based on a unified, probabilistic approach. The coverage combines breadth and depth, offering necessary background material on such topics as probability, optimization, and linear algebra as well as discussion of recent developments in the field, including conditional random fields, L1 regularization, and deep learning. The book is written in an informal, accessible style, complete with pseudo-code for the most important algorithms. All topics are copiously illustrated with color images and worked examples drawn from such application domains as biology, text processing, computer vision, and robotics. Rather than providing a cookbook of different heuristic methods, the book stresses a principled model-based approach, often using the language of graphical models to specify models in a concise and intuitive way. Almost all the models described have been implemented in a MATLAB software package--PMTK (probabilistic modeling toolkit)--that is freely available online. The book is suitable for upper-level undergraduates with an introductory-level college math background and beginning graduate students.

Machine Learning : A Probabilistic Perspective

We describe the design and use of the Stanford CoreNLP toolkit, an extensible pipeline that provides core natural language analysis. This toolkit is quite widely used, both in the research NLP community and also among commercial and government users of open source NLP technology. We suggest that this follows from a simple, approachable design, straightforward interfaces, the inclusion of robust and good quality analysis components, and not requiring use of a large amount of associated baggage.

/pdf/the-stanford-corenlp-natural-language-processing-toolkit-1gq0vc5495.pdf

The Stanford CoreNLP Natural Language Processing Toolkit

Recent progress in natural language processing has been driven by advances in both model architecture and model pretraining. Transformer architectures have facilitated building higher-capacity models and pretraining has made it possible to effectively utilize this capacity for a wide variety of tasks. Transformers is an open-source library with the goal of opening up these advances to the wider machine learning community. The library consists of carefully engineered state-of-the art Transformer architectures under a unified API. Backing this library is a curated collection of pretrained models made by and available for the community. Transformers is designed to be extensible by researchers, simple for practitioners, and fast and robust in industrial deployments. The library is available at https://github.com/huggingface/transformers.

/pdf/transformers-state-of-the-art-natural-language-processing-1zozhnrntv.pdf

Transformers: State-of-the-Art Natural Language Processing

We propose a hierarchical attention network for document classification. Our model has two distinctive characteristics: (i) it has a hierarchical structure that mirrors the hierarchical structure of documents; (ii) it has two levels of attention mechanisms applied at the wordand sentence-level, enabling it to attend differentially to more and less important content when constructing the document representation. Experiments conducted on six large scale text classification tasks demonstrate that the proposed architecture outperform previous methods by a substantial margin. Visualization of the attention layers illustrates that the model selects qualitatively informative words and sentences.

/pdf/hierarchical-attention-networks-for-document-classification-2f4ul5pyx3.pdf

Hierarchical Attention Networks for Document Classification

Despite progress in perceptual tasks such as image classification, computers still perform poorly on cognitive tasks such as image description and question answering. Cognition is core to tasks that involve not just recognizing, but reasoning about our visual world. However, models used to tackle the rich content in images for cognitive tasks are still being trained using the same datasets designed for perceptual tasks. To achieve success at cognitive tasks, models need to understand the interactions and relationships between objects in an image. When asked "What vehicle is the person riding?", computers will need to identify the objects in an image as well as the relationships riding(man, carriage) and pulling(horse, carriage) to answer correctly that "the person is riding a horse-drawn carriage." In this paper, we present the Visual Genome dataset to enable the modeling of such relationships. We collect dense annotations of objects, attributes, and relationships within each image to learn these models. Specifically, our dataset contains over 108K images where each image has an average of $$35$$35 objects, $$26$$26 attributes, and $$21$$21 pairwise relationships between objects. We canonicalize the objects, attributes, relationships, and noun phrases in region descriptions and questions answer pairs to WordNet synsets. Together, these annotations represent the densest and largest dataset of image descriptions, objects, attributes, relationships, and question answer pairs.

/pdf/visual-genome-connecting-language-and-vision-using-15ih2ylk6r.pdf

Visual Genome: Connecting Language and Vision Using Crowdsourced Dense Image Annotations

Multi-task learning is the problem of maximizing the performance of a system across a number of related tasks. When applied to multiple domains for the same task, it is similar to domain adaptation, but symmetric, rather than limited to improving performance on a target domain. We present a more principled, better performing model for this problem, based on the use of a hierarchical Bayesian prior. Each domain has its own domain-specific parameter for each feature but, rather than a constant prior over these parameters, the model instead links them via a hierarchical Bayesian global prior. This prior encourages the features to have similar weights across domains, unless there is good evidence to the contrary. We show that the method of (Daume III, 2007), which was presented as a simple "preprocessing step," is actually equivalent, except our representation explicitly separates hyperparameters which were tied in his work. We demonstrate that allowing different values for these hyperparameters significantly improves performance over both a strong baseline and (Daume III, 2007) within both a conditional random field sequence model for named entity recognition and a discriminatively trained dependency parser.

/pdf/hierarchical-bayesian-domain-adaptation-4gpihhessc.pdf

Hierarchical Bayesian Domain Adaptation

We describe a machine learning system for the recognition of names in biomedical texts. The system makes extensive use of local and syntactic features within the text, as well as external resources including the web and gazetteers. It achieves an F-score of 70% on the Coling 2004 NLPBA/BioNLP shared task of identifying five biomedical named entities in the GENIA corpus.

/pdf/exploiting-context-for-biomedical-entity-recognition-from-3lnj0ph4d2.pdf

Exploiting context for biomedical entity recognition: from syntax to the web

The end-to-end performance of natural language processing systems for compound tasks, such as question answering and textual entailment, is often hampered by use of a greedy 1-best pipeline architecture, which causes errors to propagate and compound at each stage. We present a novel architecture, which models these pipelines as Bayesian networks, with each low level task corresponding to a variable in the network, and then we perform approximate inference to find the best labeling. Our approach is extremely simple to apply but gains the benefits of sampling the entire distribution over labels at each stage in the pipeline. We apply our method to two tasks -- semantic role labeling and recognizing textual entailment -- and achieve useful performance gains from the superior pipeline architecture.

/pdf/solving-the-problem-of-cascading-errors-approximate-bayesian-46sejplyuq.pdf

Solving the Problem of Cascading Errors: Approximate Bayesian Inference for Linguistic Annotation Pipelines

Good automatic information extraction tools offer hope for automatic processing of the exploding biomedical literature, and successful named entity recognition is a key component for such tools We present a maximum-entropy based system incorporating a diverse set of features for identifying gene and protein names in biomedical abstracts This system was entered in the BioCreative comparative evaluation and achieved a precision of 083 and recall of 084 in the "open" evaluation and a precision of 078 and recall of 085 in the "closed" evaluation Central contributions are rich use of features derived from the training data at multiple levels of granularity, a focus on correctly identifying entity boundaries, and the innovative use of several external knowledge sources including full MEDLINE abstracts and web searches

/pdf/exploring-the-boundaries-gene-and-protein-identification-in-1wvc98073t.pdf

Exploring the boundaries: gene and protein identification in biomedical text.

A desirable quality of a coreference resolution system is the ability to handle transitivity constraints, such that even if it places high likelihood on a particular mention being coreferent with each of two other mentions, it will also consider the likelihood of those two mentions being coreferent when making a final assignment. This is exactly the kind of constraint that integer linear programming (ILP) is ideal for, but, surprisingly, previous work applying ILP to coreference resolution has not encoded this type of constraint. We train a coreference classifier over pairs of mentions, and show how to encode this type of constraint on top of the probabilities output from our pairwise classifier to extract the most probable legal entity assignments. We present results on two commonly used datasets which show that enforcement of transitive closure consistently improves performance, including improvements of up to 3.6% using the b3 scorer, and up to 16.5% using cluster f-measure.

/pdf/enforcing-transitivity-in-coreference-resolution-yxnwcdvwul.pdf

Jenny Rose Finkel

Papers

Hierarchical Bayesian Domain Adaptation

Exploiting context for biomedical entity recognition: from syntax to the web

Solving the Problem of Cascading Errors: Approximate Bayesian Inference for Linguistic Annotation Pipelines

Exploring the boundaries: gene and protein identification in biomedical text.

Enforcing Transitivity in Coreference Resolution