Summary
Mechanisms for C stabilization in soils have received much interest recently due to their relevance in the global C cycle. Here we review the mechanisms that are currently, but often contradictorily or inconsistently, considered to contribute to organic matter (OM) protection against decomposition in temperate soils: (i) selective preservation due to recalcitrance of OM, including plant litter, rhizodeposits, microbial products, humic polymers, and charred OM; (ii) spatial inaccessibility of OM against decomposer organisms due to occlusion, intercalation, hydrophobicity and encapsulation; and (iii) stabilization by interaction with mineral surfaces (Fe-, Al-, Mn-oxides, phyllosilicates) and metal ions. Our goal is to assess the relevance of these mechanisms to the formation of soil OM during different stages of decomposition and under different soil conditions. The view that OM stabilization is dominated by the selective preservation of recalcitrant organic components that accumulate in proportion to their chemical properties can no longer be accepted. In contrast, our analysis of mechanisms shows that: (i) the soil biotic community is able to disintegrate any OM of natural origin; (ii) molecular recalcitrance of OM is relative, rather than absolute; (iii) recalcitrance is only important during early decomposition and in active surface soils; while (iv) during late decomposition and in the subsoil, the relevance of spatial inaccessibility and organo-mineral interactions for SOM stabilization increases. We conclude that major difficulties in the understanding and prediction of SOM dynamics originate from the simultaneous operation of several mechanisms. We discuss knowledge gaps and promising directions of future research.

Stabilization of organic matter in temperate soils: mechanisms and their relevance under different soil conditions – a review

Soil organic matter (SOM) consists of various functional pools that are stabilized by specific mechanisms and have certain turnover rates. For the development of mechanistic models that predict changes in SOM storage, these pools have to be quantified and characterized. In the past, numerous fractionation schemes have been developed to separate and analyse such SOM fractions. In this review, the SOM fractions obtained with such operational fractionation procedures are described in terms of their pool sizes, chemical properties, and turnover rates. The main objective of this review is to evaluate these operationally defined fractions with respect to their suitability to describe functional SOM pools that could be used to parameterize SOM turnover models. Fractionation procedures include (1) physical separation of SOM into aggregate, particle size, and density fractions and fractions according to their magnetic susceptibility, and (2) various wet chemical procedures that fractionate SOM according to solubility, hydrolysability, and resistance to oxidation or by destruction of the mineral phase. Furthermore, combinations of fractionation methods are evaluated. The active SOM pool with turnover rates

SOM fractionation methods: Relevance to functional pools and to stabilization mechanisms

We summarize progress with respect to (1) different approaches to isolate, extract, and quantify organo-mineral compounds from soils, (2) types of mineral surfaces and associated interactions, (3) the distribution and function of soil biota at organo-mineral surfaces, (4) the distribution and content of organo-mineral associations, and (5) the factors controlling the turnover of organic matter (OM) in organo-mineral associations from temperate soils. Physical fractionation achieves a rough separation between plant residues and mineral-associated OM, which makes density or particle-size fractionation a useful pretreatment for further differentiation of functional fractions. A part of the OM in organo-mineral associations resists different chemical treatments, but the data obtained cannot readily be compared among each other, and more research is necessary on the processes underlying resistance to treatments for certain OM components. Studies using physical-fractionation procedures followed by soil-microbiological analyses revealed that organo-mineral associations spatially isolate C sources from soil biota, making quantity and quality of OM in microhabitats an important factor controlling community composition. The distribution and activity of soil microorganisms at organo-mineral surfaces can additionally be modified by faunal activities. Composition of OM in organo-mineral associations is highly variable, with loamy soils having generally a higher contribution of polysaccharides, whereas mineral-associated OM in sandy soils is often more aliphatic. Though highly reactive towards Fe oxide surfaces, lignin and phenolic components are usually depleted in organo-mineral associations. Charred OM associated with the mineral surface contributes to a higher aromaticity in heavy fractions. The relative proportion of OC bound in organo-mineral fractions increases with soil depth. Likewise does the strength of the bonding. Organic molecules sorbed to the mineral surfaces or precipitated by Al are effectively stabilized, indicated by reduced susceptibility towards oxidative attack, higher thermal stability, and lower bioavailability. At higher surface loading, organic C is much better bioavailable, also indicated by little 14C age. In the subsurface horizons of the soils investigated in this study, Fe oxides seem to be the most important sorbents, whereas phyllosilicate surfaces may be comparatively more important in topsoils. Specific surface area of soil minerals is not always a good predictor for C-stabilization potentials because surface coverage is discontinuous. Recalcitrance and accessibility/aggregation seem to determine the turnover dynamics in fast and intermediate cycling OM pools, but for long-term OC preservation the interactions with mineral surfaces, and especially with Fe oxide surfaces, are a major control in all soils investigated here.

Organo-mineral associations in temperate soils: Integrating biology, mineralogy, and organic matter chemistry

Biogeochemistry of paddy soils

Controls of bioavailability and biodegradability of dissolved organic matter in soils

Biodegradation of soil-derived dissolved organic matter as related to its properties

Properties of dissolved organic matter (DOM) determine its biodegradation. In turn, biodegradation changes the properties of the remaining DOM, which may be decisive for the formation of stable organic carbon in soil. To gain information on both mechanisms and controlling factors of DOM biodegradation and the properties of biodegraded DOM, we investigated changes in the composition of 13 different DOM samples extracted from maize straw, forest floors, peats, and agricultural soils during a 90-day incubation using UV absorbance, fluorescence emission spectroscopy, FTIR-spectroscopy, 1 H-NMR spectroscopy, pyrolysis-field ionization mass spectroscopy (Py-FIMS), and 13 C natural abundance before and after incubation. Changes in the DOM properties were related to the extent of biodegradation determined by the release of CO2. Increasing UV absorption and humification indices deduced from fluorescence emission spectra, and increasing portions of aromatic H indicated relative enrichment of aromatic compounds during biodegradation. This enrichment significantly correlated with the amount of DOC mineralized suggesting that aromatic compounds were relatively stable and slowly mineralized. 13 C depletion during the incubation of highly degradable DOM solutions indicated an enrichment of lignin-derived aromatic compounds. Py-FI mass spectra indicated increasing contents of phenols and lignin monomers at the expense of lignin dimers and alkylaromatics during incubation. This partial degradation of higher-molecular, lignin-derived DOM compounds was accompanied by relative increases in the proportions of lower-molecular degradation products and microbial metabolites. Carbohydrates, especially when abundant at high initial contents, seem to be the preferred substrate for microorganisms. However, four independent methods suggested also some microbial production of carbohydrates and peptides during DOM degradation. After incubation, the composition of highly degradable DOM samples became similar to relatively stable DOM samples with respect to aromaticity, carbohydrate content, and thermal stability. We conclude that DOM biodegradation seems to result in organic matter properties being a precondition for the formation of stable carbon. These structural changes induced by DOM biodegradation should also result in stronger DOM sorption to the soil matrix additionally affecting DOM stabilization. q 2003 Elsevier Science Ltd. All rights reserved.

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Juliane Schmerwitz

Papers

Biodegradation of soil-derived dissolved organic matter as related to its properties

Changes in properties of soil-derived dissolved organic matter induced by biodegradation