Statistics for Spatial Data.

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Modern Applied Statistics With S

One of the core problems of modern statistics is to approximate difficult-to-compute probability densities. This problem is especially important in Bayesian statistics, which frames all inference about unknown quantities as a calculation involving the posterior density. In this article, we review variational inference (VI), a method from machine learning that approximates probability densities through optimization. VI has been used in many applications and tends to be faster than classical methods, such as Markov chain Monte Carlo sampling. The idea behind VI is to first posit a family of densities and then to find a member of that family which is close to the target density. Closeness is measured by Kullback–Leibler divergence. We review the ideas behind mean-field variational inference, discuss the special case of VI applied to exponential family models, present a full example with a Bayesian mixture of Gaussians, and derive a variant that uses stochastic optimization to scale up to massive data...

Variational Inference: A Review for Statisticians

Statistical Analysis With Missing Data (2nd ed.) (Book)

A survey of recent developments in the theory and application of com- posite likelihood is provided, building on the review paper of Varin(2008). A range of application areas, including geostatistics, spatial extremes, and space-time mod- els, as well as clustered and longitudinal data and time series are considered. The important area of applications to statistical genetics is omitted, in light ofLarribe and Fearnhead(2011). Emphasis is given to the development of the theory, and the current state of knowledge on e!ciency and robustness of composite likelihood inference.

/pdf/an-overview-of-composite-likelihood-methods-2lgbmk7ee2.pdf

An overview of composite likelihood methods

Bias prevention of maximum likelihood estimates for scalar skew normal and skew t distributions

Composite likelihood may be useful for approximating likelihood based inference when the full likelihood is too complex to deal with. Stemming from a misspecified model, inference based on composite likelihood requires suitable corrections. Here we focus on the composite likelihood ratio statistic for a mul- tidimensional parameter of interest, and we propose a parameterization invariant adjustment that allows reference to the usual asymptotic chi-square distribution. Two examples dealing with pairwise likelihood are analysed through simulation.

/pdf/adjusting-composite-likelihood-ratio-statistics-2g333z1v5f.pdf

Adjusting composite likelihood ratio statistics

It is well known, at least through many examples, that when there are many nuisance parameters modified profile likelihoods often perform much better than the profile likelihood. Ordinary asymptotics almost totally fail to deal with this issue. For this reason, we study asymptotic properties of the profile and modified profile likelihoods in models for stratified data in a two-index asymptotics setting. This means that both the sample size of the strata, m, and the dimension of the nuisance parameter, q, may increase to infinity. It is shown that in this asymptotic setting modified profile likelihoods give improvements, with respect to the profile likelihood, in terms of consistency of estimators and of asymptotic distributional properties. In particular, the modified profile likelihood based statistics have the usual asymptotic distribution, provided that l/m = o(q - 1 / 3 ), while the analogous condition for the profile likelihood is l/m = o(q - 1 ).

Modified profile likelihoods in models with stratum nuisance parameters

This paper presents an integrated framework for estimation and inference from generalized linear models using adjusted score equations that result in mean and median bias reduction. The framework unifies theoretical and methodological aspects of past research on mean bias reduction and accommodates, in a natural way, new advances on median bias reduction. General expressions for the adjusted score functions are derived in terms of quantities that are readily available in standard software for fitting generalized linear models. The resulting estimating equations are solved using a unifying quasi-Fisher scoring algorithm that is shown to be equivalent to iteratively reweighted least squares with appropriately adjusted working variates. Formal links between the iterations for mean and median bias reduction are established. Core model invariance properties are used to develop a novel mixed adjustment strategy when the estimation of a dispersion parameter is necessary. It is also shown how median bias reduction in multinomial logistic regression can be done using the equivalent Poisson log-linear model. The estimates coming out from mean and median bias reduction are found to overcome practical issues related to infinite estimates that can occur with positive probability in generalized linear models with multinomial or discrete responses, and can result in valid inferences even in the presence of a high-dimensional nuisance parameter.

/pdf/mean-and-median-bias-reduction-in-generalized-linear-models-5ajn14s590.pdf

Mean and median bias reduction in generalized linear models

Both approximate Bayesian computation (ABC) and composite likelihood methods are useful for Bayesian and frequentist inference, respectively, when the likelihood function is intractable. We propose to use composite likelihood score functions as summary statistics in ABC in order to obtain accurate approximations to the posterior distribution. This is motivated by the use of the score function of the full likelihood, and extended to general unbiased estimating functions in complex models. Moreover, we show that if the composite score is suitably standardised, the resulting ABC procedure is invariant to reparameterisations and automatically adjusts the curvature of the composite likelihood, and of the corresponding posterior distribution. The method is illustrated through examples with simulated data, and an application to modelling of spatial extreme rainfall data is discussed.

Nicola Sartori

Papers

Bias prevention of maximum likelihood estimates for scalar skew normal and skew t distributions

Adjusting composite likelihood ratio statistics

Modified profile likelihoods in models with stratum nuisance parameters

Mean and median bias reduction in generalized linear models

Approximate Bayesian computation with composite score functions