https://zenodo.org/record/1258869/files/article.pdf

NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations

Nanoparticles: Properties, applications and toxicities

Activation of persulfate (PS) and peroxymonosulfate (PMS) and application for the degradation of emerging contaminants

Combined quantum-mechanics/molecular-mechanics (QM/MM) approaches have become the method of choice for modeling reactions in biomolecular systems. Quantum-mechanical (QM) methods are required for describing chemical reactions and other electronic processes, such as charge transfer or electronic excitation. However, QM methods are restricted to systems of up to a few hundred atoms. However, the size and conformational complexity of biopolymers calls for methods capable of treating up to several 100,000 atoms and allowing for simulations over time scales of tens of nanoseconds. This is achieved by highly efficient, force-field-based molecular mechanics (MM) methods. Thus to model large biomolecules the logical approach is to combine the two techniques and to use a QM method for the chemically active region (e.g., substrates and co-factors in an enzymatic reaction) and an MM treatment for the surroundings (e.g., protein and solvent). The resulting schemes are commonly referred to as combined or hybrid QM/MM methods. They enable the modeling of reactive biomolecular systems at a reasonable computational effort while providing the necessary accuracy.

QM/MM Methods for Biomolecular Systems

Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics.

Reduction of chlorinated solvents by fine-grained iron metal was studied in well-mixed anaerobic batch systems in order to help assess the utility of this reaction in remediation of contaminated groundwater. Iron sequentially dehalogenates carbon tetrachloride via chloroform to methylene chloride. The initial rate of each reaction step was pseudo-first-order in substrate and became substantially slower with each dehalogenation step. Thus, carbon tetrachloride degradation typically occurred in several hours, but no significant reduction of methylene chloride was observed over 1 month. Trichloroethene (TCE) was also dechlorinated by iron, although more slowly than carbon tetrachloride. Increasing the clean surface area of iron greatly increased the rate of carbon tetrachloride dehalogenation, whereas increasing pH decreased the reduction rate slightly. The reduction of chlorinated methanes in batch model systems appears to be coupled with oxidative dissolution (corrosion) of the iron through a largely diffusion-limited surface reaction.

Reductive Dehalogenation of Chlorinated Methanes by Iron Metal

There are reports that nano-sized zero-valent iron (Fe0) exhibits greater reactivity than micro-sized particles of Fe0, and it has been suggested that the higher reactivity of nano-Fe0 may impart advantages for groundwater remediation or other environmental applications. However, most of these reports are preliminary in that they leave a host of potentially significant (and often challenging) material or process variables either uncontrolled or unresolved. In an effort to better understand the reactivity of nano-Fe0, we have used a variety of complementary techniques to characterize two widely studied nano-Fe0 preparations:  one synthesized by reduction of goethite with heat and H2 (FeH2) and the other by reductive precipitation with borohydride (FeBH). FeH2 is a two-phase material consisting of 40 nm α-Fe0 (made up of crystals approximately the size of the particles) and Fe3O4 particles of similar size or larger containing reduced sulfur; whereas FeBH is mostly 20−80 nm metallic Fe particles (aggregates ...

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Characterization and properties of metallic iron nanoparticles: Spectroscopy, electrochemistry, and kinetics

Nanotechnologies for environmental cleanup

The properties of iron metal that make it useful in remediation of chlorinated solvents may also lead to reduction of other groundwater contaminants such as nitro aromatic compounds (NACs). Nitrobenzene is reduced by iron under anaerobic conditions to aniline with nitrosobenzene as an intermediate product. Coupling products such as azobenzene and azoxybenzene were not detected. First-order reduction rates are similar for nitrobenzene and nitrosobenzene, but aniline appearance occurs more slowly (typical pseudo-first-order rate constants 3.5 × 10-2, 3.4 × 10-2, and 8.8 × 10-3 min-1, respectively, in the presence of 33 g/L acid-washed, 18−20 mesh Fluka iron turnings). The nitro reduction rate increased linearly with concentration of iron surface area, giving a specific reaction rate constant (3.9 ± 0.2 × 10-2 min-1 m-2 L). The minimal effects of solution pH or ring substitution on nitro reduction rates, and the linear correlation between nitrobenzene reduction rate constants and the square-root of mixing ra...

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Reduction of Nitro Aromatic Compounds by Zero-Valent Iron Metal

In situ chemical oxidation (ISCO) and in situ thermal remediation (ISTR) are applicable to treatment of groundwater contaminated with chlorinated ethenes. ISCO with persulfate (S2O8(2-)) requires activation, and this can be achieved with the heat from ISTR, so there may be advantages to combining these technologies. To explore this possibility, we determined the kinetics and products of chlorinated ethene oxidation with heat-activated persulfate and compared them to the temperature dependence of other degradation pathways. The kinetics of chlorinated ethene disappearance were pseudo-first-order for 1-2 half-lives, and the resulting rate constants-measured from 30 to 70 degrees C--fit the Arrhenius equation, yielding apparent activation energies of 101 +/- 4 kJ mol(-1) for tetrachloroethene (PCE), 108 +/- 3 kJ mol(-1) for trichloroethene (TCE), 144 +/- 5 kJ mol(-1) for cis-1,2-dichloroethene (cis-DCE), and 141 +/- 2 kJ mol(-1) for trans-1,2-dichloroethene (trans-DCE). Chlorinated byproducts were observed, but most of the parent material was completely dechlorinated. Arrhenius parameters for hydrolysis and oxidation by persulfate or permanganate were used to calculate rates of chlorinated ethene degradation by these processes over the range of temperatures relevant to ISTR and the range of oxidant concentrations and pH relevant to ISCO.

Paul G. Tratnyek

Papers

Reductive Dehalogenation of Chlorinated Methanes by Iron Metal

Characterization and properties of metallic iron nanoparticles: Spectroscopy, electrochemistry, and kinetics

Nanotechnologies for environmental cleanup

Reduction of Nitro Aromatic Compounds by Zero-Valent Iron Metal

Oxidation of chlorinated ethenes by heat-activated persulfate : Kinetics and products