Remediation of heavy metal(loid)s contaminated soils - To mobilize or to immobilize?

Soils are the most heterogeneous parts of the biosphere, with an extremely high differentiation of properties and processes within nano- to macroscales. The spatial and temporal heterogeneity of input of labile organics by plants creates microbial hotspots over short periods of time – the hot moments. We define microbial hotspots as small soil volumes with much faster process rates and much more intensive interactions compared to the average soil conditions. Such hotspots are found in the rhizosphere, detritusphere, biopores (including drilosphere) and on aggregate surfaces, but hotspots are frequently of mixed origin. Hot moments are short-term events or sequences of events inducing accelerated process rates as compared to the average rates. Thus, hotspots and hot moments are defined by dynamic characteristics, i.e. by process rates. For this hotspot concept we extensively reviewed and examined the localization and size of hotspots, spatial distribution and visualization approaches, transport of labile C to and from hotspots, lifetime and process intensities, with a special focus on process rates and microbial activities. The fraction of active microorganisms in hotspots is 2–20 times higher than in the bulk soil, and their specific activities (i.e. respiration, microbial growth, mineralization potential, enzyme activities, RNA/DNA ratio) may also be much higher. The duration of hot moments in the rhizosphere is limited and is controlled by the length of the input of labile organics. It can last a few hours up to a few days. In the detritusphere, however, the duration of hot moments is regulated by the output – by decomposition rates of litter – and lasts for weeks and months. Hot moments induce succession in microbial communities and intense intra- and interspecific competition affecting C use efficiency, microbial growth and turnover. The faster turnover and lower C use efficiency in hotspots counterbalances the high C inputs, leading to the absence of strong increases in C stocks. Consequently, the intensification of fluxes is much stronger than the increase of pools. Maintenance of stoichiometric ratios by accelerated microbial growth in hotspots requires additional nutrients (e.g. N and P), causing their microbial mining from soil organic matter, i.e. priming effects. Consequently, priming effects are localized in microbial hotspots and are consequences of hot moments. We estimated the contribution of the hotspots to the whole soil profile and suggested that, irrespective of their volume, the hotspots are mainly responsible for the ecologically relevant processes in soil. By this review, we raised the importance of concepts and ecological theory of distribution and functioning of microorganisms in soil.

Microbial hotspots and hot moments in soil: Concept & review

Summary
Carbon (C) metabolism is at the core of ecosystem function. Decomposers play a critical role in this metabolism as they drive soil C cycle by mineralizing organic matter to CO2. Their growth depends on the carbon-use efficiency (CUE), defined as the ratio of growth over C uptake. By definition, high CUE promotes growth and possibly C stabilization in soils, while low CUE favors respiration. Despite the importance of this variable, flexibility in CUE for terrestrial decomposers is still poorly characterized and is not represented in most biogeochemical models. Here, we synthesize the theoretical and empirical basis of changes in CUE across aquatic and terrestrial ecosystems, highlighting common patterns and hypothesizing changes in CUE under future climates. Both theoretical considerations and empirical evidence from aquatic organisms indicate that CUE decreases as temperature increases and nutrient availability decreases. More limited evidence shows a similar sensitivity of CUE to temperature and nutrient availability in terrestrial decomposers. Increasing CUE with improved nutrient availability might explain observed declines in respiration from fertilized stands, while decreased CUE with increasing temperature and plant C : N ratios might decrease soil C storage. Current biogeochemical models could be improved by accounting for these CUE responses along environmental and stoichiometric gradients.

https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1469-8137.2012.04225.x

Environmental and stoichiometric controls on microbial carbon‐use efficiency in soils

Phytoremediation and rhizoremediation of organic soil contaminants : Potential and challenges

Carbon use efficiency (CUE) is a fundamental parameter for ecological models based on the physiology of microorganisms. CUE determines energy and material flows to higher trophic levels, conversion of plant-produced carbon into microbial products and rates of ecosystem carbon storage. Thermodynamic calculations support a maximum CUE value of ~ 0.60 (CUE max). Kinetic and stoichiometric constraints on microbial growth suggest that CUE in multi-resource limited natural systems should approach ~ 0.3 (CUE max/2). However, the mean CUE values reported for aquatic and terrestrial ecosystems differ by twofold (~ 0.26 vs. ~ 0.55) because the methods used to estimate CUE in aquatic and terrestrial systems generally differ and soil estimates are less likely to capture the full maintenance costs of community metabolism given the difficulty of measurements in water-limited environments. Moreover, many simulation models lack adequate representation of energy spilling pathways and stoichiometric constraints on metabolism, which can also lead to overestimates of CUE. We recommend that broad-scale models use a CUE value of 0.30, unless there is evidence for lower values as a result of pervasive nutrient limitations. Ecosystem models operating at finer scales should consider resource composition, stoichiometric constraints and biomass composition, as well as environmental drivers, to predict the CUE of microbial communities.

Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling

Phytoremediation uses plants and their associated microorganisms in conjunction with agronomic techniques to remove or degrade environmental contaminants. The objective of the field study was to evaluate the effect of vegetation establishment plus fertilizer addition on the biodegradation of alkylated polycyclic aromatic hydrocarbons in a crude oil-contaminated soil. Four replications of the following treatments were used: non-vegetated non-fertilized control; fescue (Lolium arundinaceum Schreb.) − ryegrass (Lolium multiflorum L.) mixture + fertilizer; or bermudagrass (Cynodon dactylon (L.) Pers.) − fescue mixture + fertilizer. Vegetation was successfully established at the site that had an initial total petroleum hydrocarbon (TPH) concentration of 9,175 mg/kg. While alkylated two-ring naphthalenes were degraded in all treatments equally, there was greater degradation of the larger three-ring alkylated phenanthrenes-anthracenes and dibenzothiophenes in the vegetated fertilized plots compared to the non-vegetated non-fertilized plots. In this field study, an increase in rhizosphere soil volume associated with increased root length along with nutrient additions resulted in increased total bacterial, fungal, and polycyclic aromatic hydrocarbon (PAH) degrader numbers that most likely resulted in increased biodegradation of the more recalcitrant alkylated polycyclic aromatic hydrocarbon compounds in the crude oil-contaminated soil.

Phytoremediation of Alkylated Polycyclic Aromatic Hydrocarbons in a Crude Oil-Contaminated Soil

Changes in microbial properties after manure, lime, and bentonite application to a heavy metal-contaminated mine waste

One goal of soil C sequestration is to increase the mass ofC stored in agricultural soils. Reducing soil disturbance, e.g., no-till management, facilitates soil fungal growth and results in higher C sequestration rates; however, the specific mechanisms associated with short-term plant residue C and N retention are less clear. We applied 13 C- and 15 N-enriched grain sorghum [Sorghum bicolor (L.) Moench] residue to no-till (NT) and conventional tillage (CT) soils, and measured the 13 C and 15 N retention in the soil and in aggregate fractions, along with soil microbial dynamics, during a growing season. The added plant residue mineralized rapidly in both tillage systems, with similar decomposition kinetics, as indicated by 13 C data. Mass balance calculations indicated that approximately 70% of the added 13 C was mineralized to CO 2 by 40 d. Total Gram positive and Gram negative bacteria and fungal phospholipid fatty acids were higher under NT 0 to 5 cm during the most active period of residue mineralization compared with the CT 0- to 5- or 5- to 15-cm depths. No changes were observed in the NT 5- to 15-cm depth. The >1000-μm aggregate size class retained the most 13 C, regardless of tillage. The NT > 1000-μm aggregates retained more 15 N at the end of the experiment than other NT and CT aggregates size classes. Data obtained indicate higher biological activity associated with NT soils than under CT, and increased retention of plant residue C and N in macroaggregates.

Tillage Effects on Microbial and Carbon Dynamics during Plant Residue Decomposition

Phytoremediation can be a viable alternative to traditional, more costly remediation techniques. Three greenhouse studies were conducted to evaluate plant growth with different soil amendments in crude oil-contaminated soil. Growth of alfalfa (Medicago sativa L., cultivar: Riley), bermudagrass (Cynodon dactylon L., cultivar: Common), crabgrass (Digitaria sanguinalis, cultivar: Large), fescue (Lolium arundinaceum Schreb., cultivar: Kentucky 31), and ryegrass (Lolium multiflorum Lam., cultivar: Marshall) was determined in crude oil-contaminated soil amended with either inorganic fertilizer, hardwood sawdust, papermill sludge, broiler litter or unamended (control). In the first study, the addition of broiler litter reduced seed germination for ryegrass, fescue, and alfalfa. In the second study, bermudagrass grown in broiler litter-amended soil produced the most shoot biomass, bermudagrass produced the most root biomass, and crabgrass and bermudagrass produced the most root length. In the third study, soil amended with broiler litter resulted in the greatest reduction in gravimetric total petroleum hydrocarbon (TPH) levels across the six plant treatments following the 14-wk study. Ryegrass produced more root biomass than any other species when grown in inorganic fertilizer- or hardwood sawdust + inorganic fertilizer-amended soil. The studies demonstrated that soil amendments and plant species selection were important considerations for phytoremediation of crude oil-contaminated soil.

Influence of organic and inorganic soil amendments on plant growth in crude oil-contaminated soil

Although soil-dwelling Collembola can influence plant growth and nutrient cycling, their specific role in soil food webs is poorly understood. Soil-free microcosm studies suggest that Collembola are primarily fungivores where they feed preferentially on saprophytic fungi (SF) over other fungal types. We directly assessed collembolan consumption of arbuscular mycorrhizal fungi (AMF) and SF using plant–soil mesocosms and natural abundance stable carbon isotope techniques. Mycorrhizal Andropogon gerardii (C4 grass) seedlings were placed in pots containing Collembola and soil from a C3 plant dominated site, while mycorrhizal Pascopyrum smithii (C3 grass) seedlings were placed in pots with Collembola and soil collected at a C4 plant dominated site. After 6 weeks, collembolans assimilated carbon derived from C3 and C4 sources in both A. gerardii and P. smithii treatments. Comparing Collembola isotope values in AMF vs. AMF-suppressed treatments, our data show that both AMF and SF were consumed in these experimental soil environments. r 2007 Elsevier Ltd. All rights reserved.

Paul M. White

Papers

Phytoremediation of Alkylated Polycyclic Aromatic Hydrocarbons in a Crude Oil-Contaminated Soil

Changes in microbial properties after manure, lime, and bentonite application to a heavy metal-contaminated mine waste

Tillage Effects on Microbial and Carbon Dynamics during Plant Residue Decomposition

Influence of organic and inorganic soil amendments on plant growth in crude oil-contaminated soil

Consumption of mycorrhizal and saprophytic fungi by Collembola in grassland soils