抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Atomic layer deposition: an overview.

The term photonic crystals appears because of the analogy between electron waves in crystals and the light waves in artificial periodic dielectric structures. During the recent years the investigation of one-, two-and three-dimensional periodic structures has attracted a widespread attention of the world optics community because of great potentiality of such structures in advanced applied optical fields. The interest in periodic structures has been stimulated by the fast development of semiconductor technology that now allows the fabrication of artificial structures, whose period is comparable with the wavelength of light in the visible and infrared ranges.

http://ieeexplore.ieee.org/iel5/6354/16969/00781867.pdf

Photonic crystals

We examine the current performance and future demands of interconnects to and on silicon chips. We compare electrical and optical interconnects and project the requirements for optoelectronic and optical devices if optics is to solve the major problems of interconnects for future high-performance silicon chips. Optics has potential benefits in interconnect density, energy, and timing. The necessity of low interconnect energy imposes low limits especially on the energy of the optical output devices, with a ~ 10 fJ/bit device energy target emerging. Some optical modulators and radical laser approaches may meet this requirement. Low (e.g., a few femtofarads or less) photodetector capacitance is important. Very compact wavelength splitters are essential for connecting the information to fibers. Dense waveguides are necessary on-chip or on boards for guided wave optical approaches, especially if very high clock rates or dense wavelength-division multiplexing (WDM) is to be avoided. Free-space optics potentially can handle the necessary bandwidths even without fast clocks or WDM. With such technology, however, optics may enable the continued scaling of interconnect capacity required by future chips.

Device Requirements for Optical Interconnects to Silicon Chips

Artificially structured metamaterials have enabled unprecedented flexibility in manipulating electromagnetic waves and producing new functionalities, including the cloak of invisibility based on coordinate transformation1,2,3. Unlike other cloaking approaches4,5,6, which are typically limited to subwavelength objects, the transformation method allows the design of cloaking devices that render a macroscopic object invisible. In addition, the design is not sensitive to the object that is being cloaked. The first experimental demonstration of such a cloak at microwave frequencies was recently reported7. We note, however, that that design7 cannot be implemented for an optical cloak, which is certainly of particular interest because optical frequencies are where the word ‘invisibility’ is conventionally defined. Here we present the design of a non-magnetic cloak operating at optical frequencies. The principle and structure of the proposed cylindrical cloak are analysed, and the general recipe for the implementation of such a device is provided.

/pdf/optical-cloaking-with-metamaterials-44hn07kw9x.pdf

Optical cloaking with metamaterials

Embodiments of the present invention can resolve molecules beyond the optical diffraction limit in three dimensions. A double-helix point spread function can be used to in conjunction with a microscope to provide dual-lobed images of a molecule. Based on the rotation of the dual-lobed image, the axial position of the molecule can be estimated or determined. In some embodiments, the angular rotation of the dual-lobed imaged can be determined using a centroid fit calculation or by finding the midpoints of the centers of the two lobes. Regardless of the technique, the correspondence between the rotation and axial position can be utilized. A double-helix point spread function can also be used to determine the lateral positions of molecules and hence their three-dimensional location.

https://www.pnas.org/content/pnas/106/9/2995.full.pdf

Three-dimensional single-molecule fluorescence imaging beyond the diffraction limit using a double-helix point spread function

We introduce a phase-control holographic technique to characterize scattering media with the purpose of focusing light through it. The system generates computer-generated holograms implemented via a deformable mirror device (DMD) based on micro-electro-mechanical technology. The DMD can be updated at high data rates, enabling high speed wavefront measurements using the transmission matrix method. The transmission matrix of a scattering material determines the hologram required for focusing through the scatterer. We demonstrate this technique measuring a transmission matrix with 256 input modes and a single output mode in 33.8 ms and creating a focus with a signal to background ratio of 160. We also demonstrate focusing through a temporally dynamic, strongly scattering sample with short speckle decorrelation times.

High-speed scattering medium characterization with application to focusing light through turbid media.

We introduce genetic algorithms (GA) for wavefront control to focus light through highly scattering media. We theoretically and experimentally compare GAs to existing phase control algorithms and show that GAs are particularly advantageous in low signal-to-noise environments.

Genetic algorithm optimization for focusing through turbid media in noisy environments

We demonstrate three-dimensional tracking of fluorescent microparticles, with a computational optical system whose point spread function (PSF) has been engineered to have two twisting lobes along the optical axis, generating a three-dimensional (3D) double-helix (DH) PSF. An information theoretical comparison in photon limited systems shows that the DH-PSF delivers higher Fisher information for 3D localization than the standard PSF. Hence, DH-PSF systems provide better position estimation accuracy. Experiments demonstrate average position estimation accuracies under 14nm and 37nm in the transverse and axial dimensions respectively. The system determines the 3D position of multiple particles with a single image and tracks them over time while providing their velocities.

Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system

We present a rigorous electromagnetic formalism for defining, evaluating, and optimizing the degrees of freedom of an optical system. The analysis is valid for the delivery of information with electromagnetic waves under arbitrary boundary conditions communicating between domains in three-dimensional space. We show that, although in principle there is an infinity of degrees of freedom, the effective number is finite owing to the presence of noise. This is in agreement with the restricted classical theories that showed this property for specific optical systems and within the scalar and paraxial approximations. We further show that the best transmitting and receiving functions are the solutions of well-defined eigenvalue equations. The present approach is useful for understanding and designing modern optical systems for which the previous approaches are not applicable, as well as for application in inverse and synthesis problems.

/pdf/electromagnetic-degrees-of-freedom-of-an-optical-system-aklqbsusuh.pdf

Rafael Piestun

Papers

Three-dimensional single-molecule fluorescence imaging beyond the diffraction limit using a double-helix point spread function

High-speed scattering medium characterization with application to focusing light through turbid media.

Genetic algorithm optimization for focusing through turbid media in noisy environments

Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system

Electromagnetic degrees of freedom of an optical system