/pdf/evolution-at-two-levels-in-humans-and-chimpanzees-4j80qi0jr2.pdf

Evolution at two levels in humans and chimpanzees

Gene Flow in Natural Populations

A. method for estimating the average level of gene flow in a subdivided population, as measured by the average number of migrants exchanged between local populations, Nm, is presented. The results from a computer simulation model show that the logarithm of Nm is approximately linearly related to the logarithm of the average frequency of private alleles, p(1), in a sample of alleles from the population. It is shown that this result is relatively insensitive to changes in parameters of the model other than Nm and the number of individuals sampled per population. The dependence of the value of p(1) on the numbers of individuals sampled provides a rough way to correct for differences in sample size. This method was applied to data from 16 species, showing that estimated values of Nm range from much greater than 1 to less than 0.1. These results confirm the qualitative analysis of Slatkin (1981). This method was also applied to subsamples from a population to show how to measure the extent of isolation of local populations.

Rare alleles as indicators of gene flow

A new model of mutational production of alleles was proposed which may be appropriate to estimate the number of electrophoretically detectable alleles maintained in a finite population. The model assumes that the entire allelic states are expressed by integers (…, A−1, A0, A1, …) and that if an allele changes state by mutation the change occurs in such a way that it moves either one step in the positive direction or one step in the negative direction (see also Fig. 1). It was shown that for this model the ‘effective’ number of selectively neutral alleles maintained in a population of the effective size Ne under mutation rate υ per generation is given byWhen 4Neυ is small, this differs little from the conventional formula by Kimura & Crow, i.e. ne = 1 + 4Neυ, but it gives a much smaller estimate than this when 4Neυ is large.

A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population

Genetic variation in natural populations: patterns and theory.

We describe allelic variation at 28 gene loci in natural populations of D. willistoni. Seventy samples were studied from localities extending from Mexico and Florida, through Central America, the West Indies, and tropical South America, down to South Brazil. At least several hundred, and often several thousand, genomes were sampled for each locus. We have discovered a great deal of genetic variation. On the average, 58% loci are polymorphic in a given population. (A locus is considered polymorphic when the frequency of the most common allele is no greater than 0.95). An individual fly is heterozygous, on the average, at 18.4% loci.—Concerning the pattern of the variation, the most remarkable finding is the similarity of the configuration of allelic frequencies from locality to locality throughout the distribution of the species. Our observations support the conclusion that balancing natural selection is the major factor responsible for the considerable genetic variation observed in D. willistoni.

/pdf/enzyme-variability-in-the-drosophila-willistoni-group-iv-1lt5ngx0z9.pdf

Enzyme variability in the drosophila willistoni group. iv. genic variation in natural populations of drosophila willistoni

We have studied genetic variation at 30-32 loci coding for enzymes in natural populations of five species of Drosophila. The average proportion of heterozygous loci per individual is 17.7 ± 0.4%. The average proportion of polymorphic loci per population is 69.2 ± 2.6% or 49.8 ± 2.2%, depending on what criterion of polymorphism is used. The following generalizations are advanced: (1) The amount of genetic polymorphism varies considerably from locus to locus. (2) At a given locus, populations of the same species are very similar in the amount and pattern of genetic variation. (3) However, at some loci large differences sometimes occur between local populations of the same species. (4) The amount of variation at a given locus is approximately the same in all five species. (5) When different species are compared, the pattern of the variation is either essentially identical or totally different at a majority of loci. We have tested the hypothesis that protein polymorphisms are selectively neutral by examining four predictions derived from the hypothesis. Our results are at variance with every one of the predictions. We have measured the amount of genetic differentiation, D, between taxa of various degrees of evolutionary divergence. The average value of D is 0.033 for local populations, 0.228 for subspecies, 0.226 for semispecies, 0.538 for sibling species, and 1.214 for morphologically distinguishable species. Our results indicate that a substantial degree of genetic differentiation (22.8 allelic substitutions for every 100 loci) occurs between allopatric populations that have diverged to the point where they might become different species if they were to become sympatric. However, very little additional genetic change is required for the development of complete reproductive isolation. After the speciation process is completed, species continue to diverge genetically from each other.

https://www.genetics.org/content/genetics/77/2/343.full.pdf

Genetic variation in natural populations of five drosophila species and the hypothesis of the selective neutrality of protein polymorphisms

We have studied by gel electrophoresis the variability of 14 structural genes in four sibling species, Drosophila willistoni, D. paulistorum, D. equinoxialis, and D. tropicalis. Samples of about 30 populations from different parts of the distribution areas of each species were examined. Genetic variants are found at every locus; 67% of the loci are polymorphic, having two or more alleles, the rarer of which has a frequency of 5% or higher. The gene frequencies are fairly uniform over the distribution area of each species, but considerably different in different species. It is estimated that individuals which belong to the different species differ on the average in somewhat more than one half of their gene loci. The morphological similarity of the four sibling species contrasts with the extensive diversity in their genetic materials.

/pdf/enzyme-variability-in-the-drosophila-willistoni-group-i-21800tgb7s.pdf

Enzyme variability in the Drosophila willistoni group. I. Genetic differentiation among sibling species.

https://www.genetics.org/content/genetics/69/1/63.full.pdf

Santiago Pérez-Salas

Papers

Enzyme variability in the drosophila willistoni group. iv. genic variation in natural populations of drosophila willistoni

Genetic variation in natural populations of five drosophila species and the hypothesis of the selective neutrality of protein polymorphisms

Enzyme variability in the Drosophila willistoni group. I. Genetic differentiation among sibling species.

Mechanisms of male sterility in hybrids of the Drosophila paulistorum group.