S
Simone Picelli
Researcher at Karolinska Institutet
Publications - 44
Citations - 10414
Simone Picelli is an academic researcher from Karolinska Institutet. The author has contributed to research in topics: Population & Cancer. The author has an hindex of 22, co-authored 41 publications receiving 7675 citations. Previous affiliations of Simone Picelli include Science for Life Laboratory & Karolinska University Hospital.
Papers
More filters
Journal ArticleDOI
Full-length RNA-seq from single cells using Smart-seq2
Simone Picelli,Omid R. Faridani,Åsa K. Björklund,Gösta Winberg,Sven Sagasser,Rickard Sandberg +5 more
TL;DR: In this article, the authors presented a detailed protocol for Smart-seq2 that allows the generation of full-length cDNA and sequencing libraries by using standard reagents, and the entire protocol takes ∼2 d from cell picking to having a final library ready for sequencing; sequencing will require an additional 1-3 d depending on the strategy and sequencer.
Journal ArticleDOI
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Simone Picelli,Åsa K. Björklund,Åsa K. Björklund,Omid R. Faridani,Sven Sagasser,Sven Sagasser,Gösta Winberg,Gösta Winberg,Rickard Sandberg,Rickard Sandberg +9 more
TL;DR: Smart-seq2 with improved reverse transcription, template switching and preamplification to increase both yield and length of cDNA libraries generated from individual cells to improve detection, coverage, bias and accuracy.
Journal ArticleDOI
Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.
Åsa Segerstolpe,Athanasia Palasantza,Pernilla Eliasson,Eva-Marie Andersson,Anne-Christine Andréasson,Xiaoyan Sun,Simone Picelli,Alan Sabirsh,Maryam Clausen,Magnus K. Bjursell,David M. Smith,Maria Kasper,Carina Ämmälä,Rickard Sandberg,Rickard Sandberg +14 more
TL;DR: Analysis of transcriptomes of thousands of human islet cells from healthy and type 2 diabetic donors demonstrated the utility of the generated single-cell gene expression resource, and revealed subpopulations of α, β, and acinar cells.
Journal ArticleDOI
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
Simone Picelli,Åsa K. Björklund,Björn Reinius,Björn Reinius,Sven Sagasser,Sven Sagasser,Gösta Winberg,Gösta Winberg,Rickard Sandberg,Rickard Sandberg +9 more
TL;DR: This work presents simple and robust procedures for Tn5 transposase production and optimized reaction conditions for tagmentation-based sequencing library construction and shows how molecular crowding agents both modulate library lengths and enable efficient tagmentation from subpicogram amounts of cDNA.
Journal ArticleDOI
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
Simone Picelli,Åsa K. Björklund,Åsa K. Björklund,Omid R. Faridani,Sven Sagasser,Sven Sagasser,Gösta Winberg,Gösta Winberg,Rickard Sandberg,Rickard Sandberg +9 more
TL;DR: Smart-seq2 as discussed by the authors improved reverse transcription, template switching and preamplification to increase both yield and length of cDNA libraries generated from individual cells, which have improved detection, coverage, bias and accuracy compared to Smart-seq libraries and are generated with off-the-shelf reagents at lower cost.