There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality.

Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

I and i

Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

Probability Distributions.- Linear Models for Regression.- Linear Models for Classification.- Neural Networks.- Kernel Methods.- Sparse Kernel Machines.- Graphical Models.- Mixture Models and EM.- Approximate Inference.- Sampling Methods.- Continuous Latent Variables.- Sequential Data.- Combining Models.

Pattern Recognition and Machine Learning

Soil Chemical Analysis

“Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks”の学習報告

LLNet: A deep autoencoder approach to natural low-light image enhancement

In surveillance, monitoring and tactical reconnaissance, gathering the right visual information from a dynamic environment and accurately processing such data are essential ingredients to making informed decisions which determines the success of an operation. Camera sensors are often cost-limited in ability to clearly capture objects without defects from images or videos taken in a poorly-lit environment. The goal in many applications is to enhance the brightness, contrast and reduce noise content of such images in an on-board real-time manner. We propose a deep autoencoder-based approach to identify signal features from low-light images handcrafting and adaptively brighten images without over-amplifying the lighter parts in images (i.e., without saturation of image pixels) in high dynamic range. We show that a variant of the recently proposed stacked-sparse denoising autoencoder can learn to adaptively enhance and denoise from synthetically darkened and noisy training examples. The network can then be successfully applied to naturally low-light environment and/or hardware degraded images. Results show significant credibility of deep learning based approaches both visually and by quantitative comparison with various popular enhancing, state-of-the-art denoising and hybrid enhancing-denoising techniques.

LLNet: A Deep Autoencoder Approach to Natural Low-light Image Enhancement

https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=1240&context=me_pubs

Machine Learning for High-Throughput Stress Phenotyping in Plants

https://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=1590&context=agron_pubs

Deep Learning for Plant Stress Phenotyping: Trends and Future Perspectives.

Current approaches for accurate identification, classification, and quantification of biotic and abiotic stresses in crop research and production are predominantly visual and require specialized training. However, such techniques are hindered by subjectivity resulting from inter- and intrarater cognitive variability. This translates to erroneous decisions and a significant waste of resources. Here, we demonstrate a machine learning framework's ability to identify and classify a diverse set of foliar stresses in soybean [Glycine max (L.) Merr.] with remarkable accuracy. We also present an explanation mechanism, using the top-K high-resolution feature maps that isolate the visual symptoms used to make predictions. This unsupervised identification of visual symptoms provides a quantitative measure of stress severity, allowing for identification (type of foliar stress), classification (low, medium, or high stress), and quantification (stress severity) in a single framework without detailed symptom annotation by experts. We reliably identified and classified several biotic (bacterial and fungal diseases) and abiotic (chemical injury and nutrient deficiency) stresses by learning from over 25,000 images. The learned model is robust to input image perturbations, demonstrating viability for high-throughput deployment. We also noticed that the learned model appears to be agnostic to species, seemingly demonstrating an ability of transfer learning. The availability of an explainable model that can consistently, rapidly, and accurately identify and quantify foliar stresses would have significant implications in scientific research, plant breeding, and crop production. The trained model could be deployed in mobile platforms (e.g., unmanned air vehicles and automated ground scouts) for rapid, large-scale scouting or as a mobile application for real-time detection of stress by farmers and researchers.

https://www.pnas.org/content/pnas/115/18/4613.full.pdf

Soumik Sarkar

Papers

LLNet: A deep autoencoder approach to natural low-light image enhancement

LLNet: A Deep Autoencoder Approach to Natural Low-light Image Enhancement

Machine Learning for High-Throughput Stress Phenotyping in Plants

Deep Learning for Plant Stress Phenotyping: Trends and Future Perspectives.

An explainable deep machine vision framework for plant stress phenotyping.