Showing papers by "Vandana Gupta published in 2011"

Alkaliphilic bacteria: applications in industrial biotechnology

Abstract: Alkaliphiles are interesting groups of extremophilic organisms that thrive at pH of 9.0 and above. Many of their products, in particular enzymes, have found widespread applications in industry, primarily in the detergent and laundry industries. While the enzymes have been a runaway success from the industrial point of view, many more products have been reported from alkaliphiles such as antibiotics and carotenoids. Less known are their potential for degradation of xenobiotics. They also play a key role in biogeocycling of important inorganic compounds. This review provides an insight into the huge diversity of alkaliphilic bacteria, the varied products obtained from them, and the need for further investigations on these interesting bacteria.

The zebrafish dag1 mutant: a novel genetic model for dystroglycanopathies

Abstract: In a forward genetic approach to identify novel genes for congenital muscle diseases, a zebrafish mutant, designated patchytail, was identified that exhibits degenerating muscle fibers with impaired motility behavior. Genetic mapping identified a genomic locus containing the zebrafish ortholog of the dystroglycan gene (DAG1). Patchytail fish contain a point mutation (c.1700T>A) in dag1, resulting in a missense change p.V567D. This change is associated with reduced transcripts and a complete absence of protein. The absence of α-dystroglycan and β-dystroglycan caused destabilization of dystroglycan complex, resulting in membrane damages. Membrane damage was localized on the extracellular matrix at myosepta as well as basement membrane between adjacent myofibers. These studies also identified structural abnormalities in triads at 3 days post fertilization (dpf) of dystroglycan-deficient muscles, significantly preceding sarcolemmal damage that becomes evident at 7 dpf. Immunofluorescence studies identified a subpopulation of dystroglycan that is expressed at t-tubules in normal skeletal muscles. In dag1-mutated fish, smaller and irregular-shaped t-tubule vesicles, as well as highly disorganized terminal cisternae of sarcoplasmic reticulum, were common. In addition to skeletal muscle defects, dag1-mutated fish have brain abnormalities and ocular defects in posterior as well as anterior chambers. These phenotypes of dystroglycan-deficient fish are highly reminiscent of the phenotypes observed in the human conditions muscle–eye–brain disease and Walker–Warburg syndrome. This animal model will provide unique opportunities in the understanding of biological functions of dystroglycan in a wide range of dystroglycanopathies, as disruption of this gene in higher vertebrates results in early embryonic lethality.

Analytical modeling of bidirectional multi-channel IEEE 802.11 MAC protocols

Abstract: This paper presents an analytical approach to model the bi-directional multi-channel IEEE 802.11 MAC protocols (Bi-MCMAC) for ad hoc networks. Extensive simulation work has been done for the performance evaluation of IEEE 802.11 MAC protocols. Since simulation has several limitations, this work is primarily based on the analytical approach. The objective of this paper is to show analytically the performance advantages of Bi-MCMAC protocol over the classical IEEE 802.11 MAC protocol. The distributed coordination function (DCF) mode of medium access control (MAC) is considered in the modeling. Two different channel scheduling strategies, namely, random channel selection and fastest channel first selection strategy are also presented in the presence of multiple channels with different transmission rates. M/G/1 queue is used to model the protocols, and stochastic reward nets (SRNs) are employed as a modeling technique as it readily captures the synchronization between events in the DCF mode of access. The average system throughput, mean delay, and server utilization of each MAC protocol are evaluated using the SRN formalism. We also validate our analytical model by comparison with simulation results. The results obtained through the analytical modeling approach illustrate the performance advantages of Bi-MCMAC protocols with the fastest channel first scheduling strategy over the classical IEEE 802.11 protocol for TCP traffic in wireless ad hoc networks. Copyright © 2010 John Wiley & Sons, Ltd.