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Yannick Djoumbou Feunang
Researcher at University of Alberta
Publications - 5
Citations - 8203
Yannick Djoumbou Feunang is an academic researcher from University of Alberta. The author has contributed to research in topics: Metabolome & Human Metabolome Database. The author has an hindex of 4, co-authored 4 publications receiving 4820 citations.
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DrugBank 5.0: a major update to the DrugBank database for 2018
David S. Wishart,Yannick Djoumbou Feunang,An Chi Guo,Elvis J. Lo,Ana Marcu,Jason R. Grant,Tanvir Sajed,Daniel Johnson,Carin Li,Zinat Sayeeda,Nazanin Assempour,Ithayavani Iynkkaran,Yifeng Liu,Adam Maciejewski,Nicola Gale,Alex Wilson,Lucy Chin,Ryan Cummings,Diana Le,Allison Pon,Craig Knox,Michael Wilson +21 more
TL;DR: This year’s update, DrugBank 5.0, represents the most significant upgrade to the database in more than 10 years and significant improvements have been made to the quantity, quality and consistency of drug indications, drug binding data as well as drug-drug and drug-food interactions.
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HMDB 4.0: the human metabolome database for 2018.
David S. Wishart,Yannick Djoumbou Feunang,Ana Marcu,An Chi Guo,Kevin Y. H. Liang,Rosa Vázquez-Fresno,Tanvir Sajed,Daniel Johnson,Carin Li,Naama Karu,Zinat Sayeeda,Elvis J. Lo,Nazanin Assempour,Mark V. Berjanskii,Sandeep Singhal,David Arndt,Yongjie Liang,Hasan Badran,Jason R. Grant,Arnau Serra-Cayuela,Yifeng Liu,Rupa Mandal,Vanessa Neveu,Allison Pon,Craig Knox,Michael Wilson,Claudine Manach,Augustin Scalbert +27 more
TL;DR: This year's update to the HMDB, HMDB 4.0, represents the most significant upgrade to the database in its history and should greatly enhance its ease of use and its potential applications in nutrition, biochemistry, clinical chemistry, clinical genetics, medicine, and metabolomics science.
Journal ArticleDOI
ClassyFire: automated chemical classification with a comprehensive, computable taxonomy
Yannick Djoumbou Feunang,Roman Eisner,Craig Knox,Leonid L. Chepelev,Janna Hastings,Gareth Owen,Eoin Fahy,Christoph Steinbeck,Shankar Subramanian,Evan E Bolton,Russell Greiner,David S. Wishart +11 more
TL;DR: A comprehensive, flexible, and computable, purely structure-based chemical taxonomy (ChemOnt) is developed along with a computer program (ClassyFire) that uses only chemical structures and structural features to automatically assign all known chemical compounds to a taxonomy consisting of >4800 different categories.
Journal ArticleDOI
YMDB 2.0: a significantly expanded version of the yeast metabolome database
Miguel Ramirez-Gaona,Ana Marcu,Allison Pon,An Chi Guo,Tanvir Sajed,Noah A. Wishart,Naama Karu,Yannick Djoumbou Feunang,David Arndt,David S. Wishart,David S. Wishart +10 more
TL;DR: Improvements to YMDB should not only improve the understanding of the metabolism of S. cerevisiae, but also allow more in-depth exploration of its extensive metabolic networks, signaling pathways and biochemistry.
Journal ArticleDOI
BioTransformer 3.0—a web server for accurately predicting metabolic transformation products
David S. Wishart,Siyang Tian,Dana Lynne Allen,Eponine Oler,Harrison Peters,Vicki W. Lui,Vasuk Gautam,Yannick Djoumbou Feunang,Russell Greiner,Thomas O. Metz +9 more
TL;DR: Performance tests indicate that BioTransformer 3.0 is 40–50% more accurate, far less prone to combinatorial ‘explosions’ and much more comprehensive in terms of metabolite coverage/capabilities than previous versions ofBioTransformer.