The dominant sequence transduction models are based on complex recurrent or convolutional neural networks in an encoder-decoder configuration. The best performing models also connect the encoder and decoder through an attention mechanism. We propose a new simple network architecture, the Transformer, based solely on attention mechanisms, dispensing with recurrence and convolutions entirely. Experiments on two machine translation tasks show these models to be superior in quality while being more parallelizable and requiring significantly less time to train. Our model achieves 28.4 BLEU on the WMT 2014 English-to-German translation task, improving over the existing best results, including ensembles by over 2 BLEU. On the WMT 2014 English-to-French translation task, our model establishes a new single-model state-of-the-art BLEU score of 41.8 after training for 3.5 days on eight GPUs, a small fraction of the training costs of the best models from the literature. We show that the Transformer generalizes well to other tasks by applying it successfully to English constituency parsing both with large and limited training data.

Attention Is All You Need

Deep learning has revolutionized many machine learning tasks in recent years, ranging from image classification and video processing to speech recognition and natural language understanding. The data in these tasks are typically represented in the Euclidean space. However, there is an increasing number of applications, where data are generated from non-Euclidean domains and are represented as graphs with complex relationships and interdependency between objects. The complexity of graph data has imposed significant challenges on the existing machine learning algorithms. Recently, many studies on extending deep learning approaches for graph data have emerged. In this article, we provide a comprehensive overview of graph neural networks (GNNs) in data mining and machine learning fields. We propose a new taxonomy to divide the state-of-the-art GNNs into four categories, namely, recurrent GNNs, convolutional GNNs, graph autoencoders, and spatial–temporal GNNs. We further discuss the applications of GNNs across various domains and summarize the open-source codes, benchmark data sets, and model evaluation of GNNs. Finally, we propose potential research directions in this rapidly growing field.

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A Comprehensive Survey on Graph Neural Networks

Comunicacio presentada a la 2016 Conference of the North American Chapter of the Association for Computational Linguistics, celebrada a San Diego (CA, EUA) els dies 12 a 17 de juny 2016.

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Neural Architectures for Named Entity Recognition

Motivation Biomedical text mining is becoming increasingly important as the number of biomedical documents rapidly grows. With the progress in natural language processing (NLP), extracting valuable information from biomedical literature has gained popularity among researchers, and deep learning has boosted the development of effective biomedical text mining models. However, directly applying the advancements in NLP to biomedical text mining often yields unsatisfactory results due to a word distribution shift from general domain corpora to biomedical corpora. In this article, we investigate how the recently introduced pre-trained language model BERT can be adapted for biomedical corpora. Results We introduce BioBERT (Bidirectional Encoder Representations from Transformers for Biomedical Text Mining), which is a domain-specific language representation model pre-trained on large-scale biomedical corpora. With almost the same architecture across tasks, BioBERT largely outperforms BERT and previous state-of-the-art models in a variety of biomedical text mining tasks when pre-trained on biomedical corpora. While BERT obtains performance comparable to that of previous state-of-the-art models, BioBERT significantly outperforms them on the following three representative biomedical text mining tasks: biomedical named entity recognition (0.62% F1 score improvement), biomedical relation extraction (2.80% F1 score improvement) and biomedical question answering (12.24% MRR improvement). Our analysis results show that pre-training BERT on biomedical corpora helps it to understand complex biomedical texts. Availability and implementation We make the pre-trained weights of BioBERT freely available at https://github.com/naver/biobert-pretrained, and the source code for fine-tuning BioBERT available at https://github.com/dmis-lab/biobert.

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.

Lots of learning tasks require dealing with graph data which contains rich relation information among elements. Modeling physics systems, learning molecular fingerprints, predicting protein interface, and classifying diseases demand a model to learn from graph inputs. In other domains such as learning from non-structural data like texts and images, reasoning on extracted structures (like the dependency trees of sentences and the scene graphs of images) is an important research topic which also needs graph reasoning models. Graph neural networks (GNNs) are neural models that capture the dependence of graphs via message passing between the nodes of graphs. In recent years, variants of GNNs such as graph convolutional network (GCN), graph attention network (GAT), graph recurrent network (GRN) have demonstrated ground-breaking performances on many deep learning tasks. In this survey, we propose a general design pipeline for GNN models and discuss the variants of each component, systematically categorize the applications, and propose four open problems for future research.

Graph Neural Networks: A Review of Methods and Applications

We propose a deep learning method for event-driven stock market prediction. First, events are extracted from news text, and represented as dense vectors, trained using a novel neural tensor network. Second, a deep convolutional neural network is used to model both short-term and long-term influences of events on stock price movements. Experimental results show that our model can achieve nearly 6% improvements on S&P 500 index prediction and individual stock prediction, respectively, compared to state-of-the-art baseline methods. In addition, market simulation results show that our system is more capable of making profits than previously reported systems trained on S&P 500 stock historical data.

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Deep learning for event-driven stock prediction

Transition-based dependency parsers generally use heuristic decoding algorithms but can accommodate arbitrarily rich feature representations. In this paper, we show that we can improve the accuracy of such parsers by considering even richer feature sets than those employed in previous systems. In the standard Penn Treebank setup, our novel features improve attachment score form 91.4% to 92.9%, giving the best results so far for transition-based parsing and rivaling the best results overall. For the Chinese Treebank, they give a signficant improvement of the state of the art. An open source release of our parser is freely available.

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Transition-based Dependency Parsing with Rich Non-local Features

We investigate a lattice-structured LSTM model for Chinese NER, which encodes a sequence of input characters as well as all potential words that match a lexicon. Compared with character-based methods, our model explicitly leverages word and word sequence information. Compared with word-based methods, lattice LSTM does not suffer from segmentation errors. Gated recurrent cells allow our model to choose the most relevant characters and words from a sentence for better NER results. Experiments on various datasets show that lattice LSTM outperforms both word-based and character-based LSTM baselines, achieving the best results.

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Chinese NER Using Lattice LSTM

Target-dependent sentiment analysis on Twitter has attracted increasing research attention. Most previous work relies on syntax, such as automatic parse trees, which are subject to noise for informal text such as tweets. In this paper, we show that competitive results can be achieved without the use of syntax, by extracting a rich set of automatic features. In particular, we split a tweet into a left context and a right context according to a given target, using distributed word representations and neural pooling functions to extract features. Both sentiment-driven and standard embeddings are used, and a rich set of neural pooling functions are explored. Sentiment lexicons are used as an additional source of information for feature extraction. In standard evaluation, the conceptually simple method gives a 4.8% absolute improvement over the state-of-the-art on three-way targeted sentiment classification, achieving the best reported results for this task.

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Target-dependent twitter sentiment classification with rich automatic features

Graph-based and transition-based approaches to dependency parsing adopt very different views of the problem, each view having its own strengths and limitations. We study both approaches under the framework of beam-search. By developing a graph-based and a transition-based dependency parser, we show that a beam-search decoder is a competitive choice for both methods. More importantly, we propose a beam-search-based parser that combines both graph-based and transition-based parsing into a single system for training and decoding, showing that it outperforms both the pure graph-based and the pure transition-based parsers. Testing on the English and Chinese Penn Treebank data, the combined system gave state-of-the-art accuracies of 92.1% and 86.2%, respectively.

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Yue Zhang

Papers

Deep learning for event-driven stock prediction

Transition-based Dependency Parsing with Rich Non-local Features

Chinese NER Using Lattice LSTM

Target-dependent twitter sentiment classification with rich automatic features

A tale of two parsers: investigating and combining graph-based and transition-based dependency parsing using beam-search